Locus 522

Sequence ID 3L_DroMel_CAF1
Location 1,548,863 – 1,548,966
Length 103
Max. P 0.500000
window782

overview

Window 2

Location 1,548,863 – 1,548,966
Length 103
Sequences 5
Columns 103
Reading direction reverse
Mean pairwise identity 90.40
Mean single sequence MFE -32.06
Consensus MFE -26.34
Energy contribution -26.74
Covariance contribution 0.40
Combinations/Pair 1.00
Mean z-score -1.30
Structure conservation index 0.82
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 1548863 103 - 23771897
GGCAAGGAGACGGUGACGGUGACGGUAACGCGGUCAAUUCGAAUUUCCUACUGCCGGCCGAGAUGGCAACAAUGCUUUUUAUAUAGCCAGGCGGAAGGAGUGG
........(((.(((.((....))....))).))).........(((((.((((((((..(((.((((....)))).))).....))).))))).)))))... ( -34.10)
>DroSec_CAF1 6566 97 - 1
G---AG---AAGGUGACGGUGACGGUAACGCGGUCAAUUCGAAUUUCCUACUGCCGGCCGAGAUGGCAACAAUGCUUUUUAUAUAGCCAGGCGGAAGGAGUGG
.---.(---((..((((.(((.......))).)))).)))....(((((.((((((((..(((.((((....)))).))).....))).))))).)))))... ( -32.80)
>DroSim_CAF1 6614 100 - 1
G---AGGAGACGGUGACGGUGACGGUAACGCGGUCAAUUCGAAUUUCCUACUGCCGGCCGAGAUGGCAACAAUGCUUUUUAUAUAGCCAGGCGGAAGGAGUGG
(---((..(((.(((.((....))....))).)))..)))....(((((.((((((((..(((.((((....)))).))).....))).))))).)))))... ( -36.10)
>DroEre_CAF1 7184 88 - 1
------------GAGACGGUGACGGUAACGCGGUCAAUUCGAUUUUCCUACUGCCGGCCGAGAUGCCAACAAUGCUUUUUAUAUAGCCAGGCGGAAGGAG---
------------..(((.(((.......))).)))..........((((.((((((((......)))......(((........)))..))))).)))).--- ( -27.30)
>DroYak_CAF1 7214 94 - 1
G---AG---GCGGAGACGGUGACGGUAACGCGGUCAAUUCGAUUUUCCUACUGCCGGCCGAGAUGCCAACAAUGCUUUUUAUAUAGCCAGGCGGAAGGAG---
.---..---(((....((....))....)))((((.....)))).((((.((((((((......)))......(((........)))..))))).)))).--- ( -30.00)
>consensus
G___AG___ACGGUGACGGUGACGGUAACGCGGUCAAUUCGAAUUUCCUACUGCCGGCCGAGAUGGCAACAAUGCUUUUUAUAUAGCCAGGCGGAAGGAGUGG
..............(((.(((.......))).))).........(((((.((((((((..(((.((((....)))).))).....))).))))).)))))... (-26.34 = -26.74 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:10 2006