| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 14,388,397 – 14,388,488 |
| Length | 91 |
| Max. P | 0.952975 |
| Location | 14,388,397 – 14,388,488 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 68.92 |
| Mean single sequence MFE | -17.13 |
| Consensus MFE | -9.38 |
| Energy contribution | -9.43 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.85 |
| Structure conservation index | 0.55 |
| SVM decision value | 1.43 |
| SVM RNA-class probability | 0.952975 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 14388397 91 - 23771897 CAGC-AGUCUCCACUGAAGCCAAUUAGUUGCUUCCGUAACUUCUUGGUAUUAUUUUAAUUAUCUUC-UUUCAGG----CUGAAUUUUACUUUUGGAU-------------- ...(-(((((.....((((((((..((((((....))))))..))))...............))))-....)))----)))................-------------- ( -17.96) >DroPse_CAF1 11583 74 - 1 UACUGAAGCUUUGGUGGAGCCAAUUUGUUGCUUCCGUAAUUUCUUGGUAUUAUUAUAAUAAGUUUU-UG--------------UUUUUC---------------------- .((.(((((((((((((.(((((...(((((....)))))...))))).))))))....)))))))-.)--------------).....---------------------- ( -15.00) >DroSim_CAF1 9706 91 - 1 CAGC-AGUCUCCACUGAAGCCAAUUAGUUGCUUCCGUAAUUUCUUGGUAUUAUUUUAAUUAUCUUU-UUUCAGG----CUUUAUUUGACUUUUGGAU-------------- (((.-((((.....(((((((....((((((....))))))....((((..........))))...-.....))----)))))...)))).)))...-------------- ( -17.00) >DroEre_CAF1 9889 90 - 1 CAGU-AAUCUCCACUGAAGCCAAUUAGUUGCUUCCGUAAUUUCUCGGUAUUAUUUUAAUUAG-UUU-UUUCGGG----CUUAAUUUUGUCUUUGGAU-------------- ....-....((((..(((((.((((((......(((........))).......)))))).)-)))-)...(((----(........)))).)))).-------------- ( -13.82) >DroAna_CAF1 8963 110 - 1 CACU-AAUCUCCACUGAAGCCAAUUAGUUGCUUCCGUAACUUCUUGGUAUUAUUUUAAUUAGAUUUUUUUCGGGACUACUAUACUAUACUUUUGUAUACUCUUGUGUGGUG ....-....(((..(((.(((((..((((((....))))))..))))).))).........((......)).))).(((((((((((((....))))).....)))))))) ( -23.70) >DroPer_CAF1 11703 74 - 1 AACUAAAGCUUUGGUGGAGCCAAUUUGUUGCUUCCGUAAUUUCUUGGUAUUAUUAUAAUAAGUUUU-UG--------------UUUUUC---------------------- (((.(((((((((((((.(((((...(((((....)))))...))))).))))))....)))))))-.)--------------))....---------------------- ( -15.30) >consensus CACU_AAUCUCCACUGAAGCCAAUUAGUUGCUUCCGUAAUUUCUUGGUAUUAUUUUAAUUAGCUUU_UUUC_GG____CU__AUUUUACUUUUGGAU______________ ..............(((.(((((..((((((....))))))..))))).)))........................................................... ( -9.38 = -9.43 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:44:48 2006