| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 14,385,544 – 14,385,649 |
| Length | 105 |
| Max. P | 0.929895 |
| Location | 14,385,544 – 14,385,649 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 69.79 |
| Mean single sequence MFE | -27.83 |
| Consensus MFE | -13.07 |
| Energy contribution | -13.23 |
| Covariance contribution | 0.17 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.95 |
| Structure conservation index | 0.47 |
| SVM decision value | 1.20 |
| SVM RNA-class probability | 0.929895 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 14385544 105 - 23771897 --AAAAAGGGGCAGAGAAAAAUGUGA---AAAAGCAAGAAGG--GGGAUCCCAAAGAAGGCA-GCAUUUUGUUCGCUAAAUGCGAGCAAUUUGUUACAGGAUUUUCAU-GGGUU--- --....................((((---(((.((.......--((....)).......))(-(((..((((((((.....))))))))..))))......)))))))-.....--- ( -26.04) >DroPse_CAF1 9198 108 - 1 --GGGACGGGCCGGAGG--ACGGGGGACGGGUGACGAGGGGA--ACGA--GGAGAGAAGCCAGGCACUUUGUUCGCUAAAUGCGAGCAAUUUGUUACAGGAUUUUCAU-CGGGUCGU --...((((.((((...--.(((....).(....).......--.)).--...(((((.((.((((..((((((((.....))))))))..))))...)).))))).)-))).)))) ( -34.70) >DroSim_CAF1 6858 106 - 1 --AAAAAG-GGCAGAGAAAAAUGUGA---AAAAGCAAGAAGGGGGGGAUCCCAAAGAAGGCA-GCAUUUUGUUCGCUAAAUGCGAGCAAUUUGUUACAGGAUUUUCAU-GGGUU--- --......-.............((((---(((.((.......(((....))).......))(-(((..((((((((.....))))))))..))))......)))))))-.....--- ( -27.64) >DroEre_CAF1 7020 108 - 1 --AAAAAAGGGCAAAGAAAAAUGUGGAAAAAAAACAAGAAGA--GCGAUCCCAAAGAAGGCA-GCAUUUUGUUCGCUAAAUGCGAGCAAUUUGUUACAGGAUUUUCAU-CGGUU--- --.............(((((.(.((.................--((..((.....))..))(-(((..((((((((.....))))))))..)))).)).).)))))..-.....--- ( -22.10) >DroAna_CAF1 6336 97 - 1 UCAGAAAA-GGUGGGGAAGAAUAGGA---AGAAGCU----GGGGAGAAGCCC--------CG-GCACUUUGUUGGCUAAAUGCGAGCAAUUUGUUACAGGAUUUUCAUCGGGUU--- ........-((((..((.........---....(((----((((.....)))--------))-))...(((((.((.....)).)))))............))..)))).....--- ( -29.30) >DroPer_CAF1 9324 92 - 1 --GGGACGGGGCGGAGG--ACGGGGGA------------------CGA--GGAGAGAAGCCAGGCACUUUGUUCGCUAAAUGCGAGCAAUUUGUUACAGGAUUUUCAU-CGGGUCUU --.((((....((....--.)).....------------------(((--...(((((.((.((((..((((((((.....))))))))..))))...)).))))).)-)).)))). ( -27.20) >consensus __AAAAAGGGGCAGAGAAAAAUGGGA___AAAAGCAAGAAGG__GCGAUCCCAAAGAAGGCA_GCACUUUGUUCGCUAAAUGCGAGCAAUUUGUUACAGGAUUUUCAU_CGGUU___ ...............................................................(((..((((((((.....))))))))..)))....................... (-13.07 = -13.23 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:44:47 2006