Locus 5216

Sequence ID 3L_DroMel_CAF1
Location 14,382,135 – 14,382,255
Length 120
Max. P 0.537137
window8254

overview

Window 4

Location 14,382,135 – 14,382,255
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 86.27
Mean single sequence MFE -52.50
Consensus MFE -41.66
Energy contribution -43.35
Covariance contribution 1.69
Combinations/Pair 1.11
Mean z-score -1.42
Structure conservation index 0.79
SVM decision value 0.01
SVM RNA-class probability 0.537137
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 14382135 120 + 23771897
UCAUGACCAUCGGGCGGCAGGCGGGAAUAUGUGGGUGGUGAGGCGUAGCUGAGGUAAUCCUGCACCAACAGCUGUUUAGUGGUGGUUGCCUGAUGCAGGUGGUGCGUUGCUGUCGUCGUU
..((((((((((((((((..((((((.(((.(.(((..((...))..))).).))).))))))((((((....))....)))).)))))))))))..((..((.....))..))))))). ( -43.10)
>DroPse_CAF1 5191 114 + 1
UCAUGGCCGUCGGGCGGCAGGCGGGAGUAGGUGGGCGGCGAGGCGUAGCUCAGGUACUCCUGCCCCACCAGCUGCUUUGUG---GUCGCCU---GCAGUUGGUGUGUGGCUGUCGUUGUC
..(((((.((((.((((..((((((((((..(((((.(((...))).)))))..))))))))))))(((((((((...((.---...))..---))))))))))).)))).))))).... ( -56.80)
>DroAna_CAF1 3249 120 + 1
UCAUGACCAUCGGGCGGCAGGCGGGAGUAGGUGGGUGGGGAGGCGUAGCUCAGGUAGUCCUGCACCAGCAGCUGCUUCGUGGUGGUGGCCUGGUGCAGGUGGUGCGUGGCUGUCGUCGUG
......(((((.(.(.....((....)).).).)))))...((((((((.((.(((.((((((((((((.((..((....))..)).).)))))))))).).))).)))))).))))... ( -53.30)
>DroPer_CAF1 5293 114 + 1
UCAUGGCCGUCGGGCGGCAGGCGGGAGUAGGUGGGCGGCGAGGCGUAGCUCAGGUACUCCUGCCCCACCAGCUGCUUUGUG---GUCGCCU---GCAGUUGGUGUGUGGCUGUCGUUGUC
..(((((.((((.((((..((((((((((..(((((.(((...))).)))))..))))))))))))(((((((((...((.---...))..---))))))))))).)))).))))).... ( -56.80)
>consensus
UCAUGACCAUCGGGCGGCAGGCGGGAGUAGGUGGGCGGCGAGGCGUAGCUCAGGUACUCCUGCACCACCAGCUGCUUUGUG___GUCGCCU___GCAGGUGGUGCGUGGCUGUCGUCGUC
............(((((((((((((((((..(((((.(((...))).)))))..)))))))))..((((((((((.....((......))....)))))))))).....))))))))... (-41.66 = -43.35 +   1.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:44:45 2006