Locus 5212

Sequence ID 3L_DroMel_CAF1
Location 14,364,575 – 14,364,686
Length 111
Max. P 0.828569
window8248

overview

Window 8

Location 14,364,575 – 14,364,686
Length 111
Sequences 5
Columns 112
Reading direction reverse
Mean pairwise identity 88.72
Mean single sequence MFE -29.12
Consensus MFE -22.62
Energy contribution -22.58
Covariance contribution -0.04
Combinations/Pair 1.14
Mean z-score -1.86
Structure conservation index 0.78
SVM decision value 0.71
SVM RNA-class probability 0.828569
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 14364575 111 - 23771897
ACAUU-UGGUUUUUGUUUUCGGGUUUUUGCAAGUUCGCUUUUACCUUUUGCCGCACAUUGCAAUAGGCCCAUUUAGAUUAAAGGUACGAACUGCGGAAUACCCCGCGAAACA
.....-.......((((((((((.(((((((.(((((....(((((((.(((((.....))....)))...........)))))))))))))))))))...)))).)))))) ( -30.50)
>DroSec_CAF1 188815 111 - 1
ACAUU-UGGUUUUUGUUUUCGGGUUUUUGCAAGUUCGCUUUUACCUUUUGCAGCACAUUGCAAUAGACCCAUUUAGAACAAAGGUACGAACUGCGAAAUACCCUGCUAAUCA
.....-(((((...((....(((((((((((.(((((....((((((((((((....))))).((((....))))....))))))))))))))))))).)))).)).))))) ( -28.30)
>DroSim_CAF1 184492 111 - 1
ACAUU-UGGUUUUUGUUUUCGGGUUUUUGCAAGUUCGCUUUUACCUUUUGCCGCACAUUGCAAUAGACCCAUUUAGAACAAAGGUACGAACUGCGAAAUACCCUGCGAAUCA
.....-.....(((((....(((((((((((.(((((....(((((((....((.....))..((((....))))....))))))))))))))))))).)))).)))))... ( -27.00)
>DroEre_CAF1 187519 110 - 1
ACAUUUUGGUUUUUGUU-UCGGGUUUUCGCAAGUUCGCUUUUACCUUUUGCCGCACAUUCGA-UAGAGCCAGUGGGAACAAAGGUGCGAACUGCGAAUUACCCCGCAAAUCA
...........(((((.-..((((.((((((.((((((....((((((..((.(((.(((..-..)))...)))))...))))))))))))))))))..)))).)))))... ( -36.90)
>DroYak_CAF1 195109 112 - 1
ACAUUUUGGUUUUUGUUUUCGGGUUUUUGCAACUUCGCUUUUACCUUUUGCCGCGUACUAGAACAGAAGCAGUUAAAACAAAGGUACGAACUGCGAAAUACCCCGCAAAUCA
...........(((((....(((((((((((..((((....(((((((.((.((...((.....))..)).))......))))))))))).))))))).)))).)))))... ( -22.90)
>consensus
ACAUU_UGGUUUUUGUUUUCGGGUUUUUGCAAGUUCGCUUUUACCUUUUGCCGCACAUUGCAAUAGACCCAUUUAGAACAAAGGUACGAACUGCGAAAUACCCCGCAAAUCA
...........(((((....(((((((((((.(((((....(((((((...............................))))))))))))))))))).)))).)))))... (-22.62 = -22.58 +  -0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:44:39 2006