Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 14,361,889 – 14,361,997 |
Length | 108 |
Max. P | 0.950125 |
Location | 14,361,889 – 14,361,997 |
---|---|
Length | 108 |
Sequences | 5 |
Columns | 109 |
Reading direction | reverse |
Mean pairwise identity | 90.62 |
Mean single sequence MFE | -27.01 |
Consensus MFE | -19.78 |
Energy contribution | -19.06 |
Covariance contribution | -0.72 |
Combinations/Pair | 1.20 |
Mean z-score | -2.97 |
Structure conservation index | 0.73 |
SVM decision value | 1.40 |
SVM RNA-class probability | 0.950125 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 14361889 108 - 23771897 GUUAAGCACUUUCACCUCGUUAACUGUGGCAUGUUCACAGAGCCAACAGCAUCCACAACUAAUCUGUUGCAAUAACCACUGUAAUAAUGC-UGCAACAUGCCACUGACA ..................((((...((((((((((..(((.((.....))..............(((((((........)))))))...)-)).)))))))))))))). ( -25.00) >DroSec_CAF1 186052 108 - 1 GUUAAGCACUUUCACCUCGUUAACUGUGGCAUGUUCACAGCGCCAACAGCAUCCACAACUAAUCUGUUGCAAUAACCACUGUAAUAAUGC-UGCAACAUGCCACUGACA ..................((((...((((((((((..((((((.....))..............(((((((........)))))))..))-)).)))))))))))))). ( -28.90) >DroSim_CAF1 181751 108 - 1 GUUAAGCACUUUCACCUCGUUAACUGUGGCAUGUUCACAGCGCCAACAGCAUCCACAACUAAUCUGUUGCAAUAACCACUGUAAUAAUGG-UGCAACAUGCUACUGACA ..................((((...((((((((((....((((((((((......((((......)))).........)))).....)))-))))))))))))))))). ( -27.26) >DroEre_CAF1 184693 109 - 1 GUUAAGUACUUUUCCCUCGUUAAAAGUGGCAUGUGCACAGCACCAACUCCAUCCCCAACUAAUCUGUUGCAAUAACCACUGUAAAAAUGGUUGCAACAUGCCACGAACA ..................(((....(((((((((((...................((((......))))....(((((.(.....).))))))).))))))))).))). ( -26.10) >DroYak_CAF1 192222 109 - 1 GUAAAGCACUUUCACCUCGUUAAAAGUGGCAUGUUCACAGCACCAACUGCAUCCCCAGCUAAUCUGUUGCAAUAACCACUGUAAUAAUGGUUGCAACAUGCCACGAGCC ..................(((....((((((((((....(((.....))).....((((((...(((((((........))))))).)))))).)))))))))).))). ( -27.80) >consensus GUUAAGCACUUUCACCUCGUUAACUGUGGCAUGUUCACAGCGCCAACAGCAUCCACAACUAAUCUGUUGCAAUAACCACUGUAAUAAUGG_UGCAACAUGCCACUGACA ..................(((....(((((((((.....................((((......))))..........((((........))))))))))))).))). (-19.78 = -19.06 + -0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:44:34 2006