| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 14,356,666 – 14,356,756 |
| Length | 90 |
| Max. P | 0.724712 |
| Location | 14,356,666 – 14,356,756 |
|---|---|
| Length | 90 |
| Sequences | 4 |
| Columns | 90 |
| Reading direction | forward |
| Mean pairwise identity | 85.93 |
| Mean single sequence MFE | -19.45 |
| Consensus MFE | -14.55 |
| Energy contribution | -15.55 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.72 |
| Structure conservation index | 0.75 |
| SVM decision value | 0.41 |
| SVM RNA-class probability | 0.724712 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 14356666 90 + 23771897 CUUCCCCCUGAAAAUGAAUCUGCAACAAUUUACACAGCCAUUUUGGGUCUCCUUUGGCAAUUAUUUAACAGCAAGUACAAAGGAGGAGCA .....(((..((((((...(((............))).)))))))))(((((((((.....................))))))))).... ( -16.90) >DroSec_CAF1 181208 90 + 1 CUCCCCUCUGAAAAUGAAUCUGCAAGAAUUUACACAGCCAUUUUGGGUCUCCUUUGGCAAUUAUUUAACAGCAAGUACAAAGGAGGAGCA (((((((.((.((((((.((.....)).........((((....((....))..))))..)))))).((.....)).)).))).)))).. ( -17.20) >DroEre_CAF1 179596 78 + 1 ------------AAAGAAUCUGCAACAAUUCACACAGCCAUUUGGCUUCUCCUUUGGCAAUUAUUUAACAGGAAGGACAAAGGAGGAGCA ------------...((((........)))).............((((((((((((.....................)))))))))))). ( -19.80) >DroYak_CAF1 187055 90 + 1 CUCCCCUGUGAAAAUAAAUCUGCAACAAUUUGCACAGCCAUUUAGCUUCUCCUUUGGCAAUUAUUUAACAGCAAGUACAAAGGAGGAGCA .....(((((.((((............)))).))))).......((((((((((((.....................)))))))))))). ( -23.90) >consensus CUCCCCUCUGAAAAUGAAUCUGCAACAAUUUACACAGCCAUUUUGCGUCUCCUUUGGCAAUUAUUUAACAGCAAGUACAAAGGAGGAGCA ............................................((((((((((((.....................)))))))))))). (-14.55 = -15.55 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:44:28 2006