Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 14,347,648 – 14,347,749 |
Length | 101 |
Max. P | 0.956296 |
Location | 14,347,648 – 14,347,749 |
---|---|
Length | 101 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 80.24 |
Mean single sequence MFE | -25.68 |
Consensus MFE | -20.61 |
Energy contribution | -21.30 |
Covariance contribution | 0.69 |
Combinations/Pair | 1.19 |
Mean z-score | -2.08 |
Structure conservation index | 0.80 |
SVM decision value | 1.46 |
SVM RNA-class probability | 0.956296 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 14347648 101 + 23771897 GAUCCGGAUGCCCUUAUUGCACUUUUUGCAGUGUCGCAUUGUGUGGAUCACAAAGUAUUAAUGGAACAGUCUAUUGGAGUAUGUA----UUUACUAAAAAC------UAUA--------- (((((((((((...(((((((.....)))))))..)))))...))))))....(((.((((((((....))))))))((((....----..))))....))------)...--------- ( -25.80) >DroSec_CAF1 172106 101 + 1 GAUCCGGAUGCCCUUAUUGAACUUUUUGCAGUGUCGCAUUGUGUGGAUCAAAAACUAUUAAUGGAACAGUCUAUUGGAGUAUGUA----UUUACUAAAAAC------GAUA--------- (((((((((((...(((((.........)))))..)))))...))))))........((((((((....))))))))((((....----..))))......------....--------- ( -19.90) >DroSim_CAF1 173935 101 + 1 GAUCCGGAUGCCCUUAUUGCACUUUUUGCAGUGUCGCAUUGUGUGGAUCACAAAAUAUUAAUGGAACAGUCUAUUGGAGUAUGUA----UUUACUAAAAAC------UAUA--------- (((((((((((...(((((((.....)))))))..)))))...))))))........((((((((....))))))))((((....----..))))......------....--------- ( -25.10) >DroYak_CAF1 178280 120 + 1 GCACCAGGUGCCCUAAUUGCACUCUUUGCAAUAUCGCAUCGUUCGGAUCACAAUCUAUUAAUGGAGCAAUCCAUUGAAGUAUGUACAUAUAUACCAAACACACACGCUUUAUCCGAAAAU ......(((((....((((((.....))))))...))))).(((((((.........((((((((....)))))))).((((((....))))))................)))))))... ( -31.90) >consensus GAUCCGGAUGCCCUUAUUGCACUUUUUGCAGUGUCGCAUUGUGUGGAUCACAAACUAUUAAUGGAACAGUCUAUUGGAGUAUGUA____UUUACUAAAAAC______UAUA_________ (((((((((((...(((((((.....)))))))..)))))...))))))........((((((((....))))))))........................................... (-20.61 = -21.30 + 0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:44:25 2006