Locus 5202

Sequence ID 3L_DroMel_CAF1
Location 14,340,419 – 14,340,512
Length 93
Max. P 0.561216
window8232

overview

Window 2

Location 14,340,419 – 14,340,512
Length 93
Sequences 6
Columns 93
Reading direction forward
Mean pairwise identity 93.76
Mean single sequence MFE -19.73
Consensus MFE -17.61
Energy contribution -18.17
Covariance contribution 0.56
Combinations/Pair 1.09
Mean z-score -1.18
Structure conservation index 0.89
SVM decision value 0.05
SVM RNA-class probability 0.561216
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 14340419 93 + 23771897
GGGAUUUUCGUUUCUCGCUGCUUUUUCCAUUUGCCUUGGAACGUGAGAAUUUAAUAUUUCUUUUCAUUAGCCACGCUCGACUCCAGUUCGAGC
(..((......(((((((......(((((.......))))).)))))))......))..)..............(((((((....).)))))) ( -20.80)
>DroSec_CAF1 164994 93 + 1
GGGAUUUUCGUUUCUCGCUGCUUUUUCCAUUUGCCUUGGAACGUGAGAAUUUAAUAUUUCUUUUCAUUAGCCACGCUCGACUCGAGUUCGAGC
(..((......(((((((......(((((.......))))).)))))))......))..)..............(((((((....).)))))) ( -20.80)
>DroSim_CAF1 166755 93 + 1
GGGAUUUUCGUUUCUCGCUGCUUUUUCCAUUUGCCUUGGAACGUGAGAAUUUAAUAUUUCUUUUCAUUAGCCACGCUCGACUCGAGUUCGAGC
(..((......(((((((......(((((.......))))).)))))))......))..)..............(((((((....).)))))) ( -20.80)
>DroEre_CAF1 165712 92 + 1
GGGAUUUUCGUUUCUCGCUGCUUU-UCCAUUUGCCUUGGAACGUGAGAAUUUAAUAUUUCUUUUCAUUAGCCACGCUCGACUCCAGUUCGAGC
(..((......(((((((.....(-((((.......))))).)))))))......))..)..............(((((((....).)))))) ( -21.50)
>DroYak_CAF1 170460 93 + 1
GGGAUUUUCGUUUCUCGCUGCUUUCUCCAUUUGCCUUGGAACGUGAGAAUUUAAUAUUUCUUUUCAUUAGCCACGCUCGACUCGAGUUCGAGC
(..((......(((((((.......((((.......))))..)))))))......))..)..............(((((((....).)))))) ( -19.70)
>DroAna_CAF1 158000 85 + 1
GGGUUUUUCCUUUUUC--------UUCCAUUUACCUUGGAACGUGAGAAUUUAAUAUUUCUUUUCAUUAGCCACGCUCGACUCGAUUUUGAGC
.((((...........--------(((((.......))))).(((((((...........))))))).))))..((((((.......)))))) ( -14.80)
>consensus
GGGAUUUUCGUUUCUCGCUGCUUUUUCCAUUUGCCUUGGAACGUGAGAAUUUAAUAUUUCUUUUCAUUAGCCACGCUCGACUCGAGUUCGAGC
(((((......(((((((......(((((.......))))).)))))))......)))))..............((((((.......)))))) (-17.61 = -18.17 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:44:24 2006