Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 14,339,584 – 14,339,674 |
Length | 90 |
Max. P | 0.732862 |
Location | 14,339,584 – 14,339,674 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 81.44 |
Mean single sequence MFE | -12.22 |
Consensus MFE | -9.05 |
Energy contribution | -9.05 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.63 |
Structure conservation index | 0.74 |
SVM decision value | 0.43 |
SVM RNA-class probability | 0.732862 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 14339584 90 - 23771897 -----UACCCUCCUGCCCCUA-UGGAAAUUAUUUUCAUAUUUUUC--------UCCUCCACCCCCUUUUAUUAUUUAUUUGCGCUGGC-CGCGCAUAAUUUUGUC -----..............((-(((((.....)))))))......--------..........................(((((....-.))))).......... ( -10.50) >DroSec_CAF1 164152 95 - 1 CCCGUUACCCCCCCGCACCAA-UGGAAAUUAUUUUCAUAUUUUUC--------UCCUCCACCCUCUUUUAUUAUUUAUGUGCGCUGGC-CGCGCAUAAUUCUAUC ....................(-(((((.....)))))).......--------.....................(((((((((.....-)))))))))....... ( -12.60) >DroSim_CAF1 165914 95 - 1 CCCGUUACCCCACUGCACCAA-UGGAAAUUAUUUUCAUAUUUUUC--------UCCUCCACCCCCUUUUAUUAUUUAUUUGCGCUGGC-CGCGCAUAAUUCCGUC ....................(-(((((..(((....)))......--------..........................(((((....-.)))))...)))))). ( -9.90) >DroEre_CAF1 164883 91 - 1 -----CAGCCCCCAACCUGCUUUGGAAAUUAUUUUCAUAUUUUAC--------UCCUCCACCCCCUUUUAUUAUUUAUUUGCGCUGGC-CGCGCAUAAUUCUGGC -----..(((.((((......))))....................--------..........................(((((....-.))))).......))) ( -13.00) >DroYak_CAF1 169639 90 - 1 -----UAGCCCCCCACCCGCU-UGGAAAUUAUUUUCAUAUUUUUC--------CCCUCCACCCCCUUUUAUUAUUUAUUUGCGCUGGC-CGCGCAUAAUUCUGGC -----..(((...........-.(((((.............))))--------).........................(((((....-.))))).......))) ( -13.12) >DroAna_CAF1 157130 100 - 1 -----CAGCCUUUUCCCCGCUUUCGAAAUUAUUUUCAUAUUUUUUCCUCGACCGCCUCCUUCCCAUUUUAUUAUUUAUUUGCGCUGGCCCGCGCAUAAUUCUGGC -----..(((........((..((((.....................))))..))........................(((((......))))).......))) ( -14.20) >consensus _____UACCCCCCUGCCCCCA_UGGAAAUUAUUUUCAUAUUUUUC________UCCUCCACCCCCUUUUAUUAUUUAUUUGCGCUGGC_CGCGCAUAAUUCUGGC ........................((((....))))...........................................(((((......))))).......... ( -9.05 = -9.05 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:44:23 2006