Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 14,338,449 – 14,338,542 |
Length | 93 |
Max. P | 0.595476 |
Location | 14,338,449 – 14,338,542 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 81.06 |
Mean single sequence MFE | -26.47 |
Consensus MFE | -17.45 |
Energy contribution | -16.95 |
Covariance contribution | -0.50 |
Combinations/Pair | 1.12 |
Mean z-score | -1.51 |
Structure conservation index | 0.66 |
SVM decision value | 0.12 |
SVM RNA-class probability | 0.595476 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 14338449 93 - 23771897 UGCCAUUAGAAUCGAUUUUCGGCCAAAACUUUUCGACAACUGUCAUUAGGCAUUGUUGGAUUAGCCGGUUGAGCGGUGGGCGG---------GUUGUACGAA ...........(((((..((.(((.......((((((((.((((....))))))))))))...((((......)))).))).)---------)..)).))). ( -26.30) >DroPse_CAF1 160195 81 - 1 UGCCAUUAAAAUCGAUUUUCGGCUAAAACUUUUCGACAACUGUCAUUAGGCAUUGUUGGAUUAGCCGGG-----GGCAGCC---------------CCCAA- ....................((((((.....((((((((.((((....))))))))))))))))))(((-----((...))---------------)))..- ( -27.50) >DroEre_CAF1 163769 102 - 1 UGCCAUUAGAAUCGAUUUUCGGCCAAAACUUUUCGACAACUGUCAUUAGGCAUUGUUGGAUUAGCCGAUUGUGAGGUGGGCGGGGUUUGCGGGGUGUGCGAA .((((((.....(((.(..((.((.......((((((((.((((....))))))))))))...(((........))))).))..).)))...)))).))... ( -28.30) >DroYak_CAF1 168508 93 - 1 UGCCAUUAGAAUCGAUUUUCGGCCAAAACUUUUCGACAACUGUCAUUAGGCAUUGUUGGAUUAGCCGAAUGAACGGUGGGCGG---------GGUGUACGAA ...........(((((.(((.(((.......((((((((.((((....))))))))))))...((((......)))).))).)---------)).)).))). ( -25.60) >DroAna_CAF1 156000 95 - 1 UGCCAUUAGAAUCGAUUUUAGGCCAAAACUUUUCGACAACUGUCAUUAGGCAUUGUUGGAUUAGCCGGAUGAGAGGUGGAUGGGG-------GUGGGAUGAA ..(((((...(((.(((((...((.......((((((((.((((....))))))))))))......))....))))).)))...)-------))))...... ( -23.62) >DroPer_CAF1 174579 81 - 1 UGCCAUUAAAAUCGAUUUUCGGCUAAAACUUUUCGACAACUGUCAUUAGGCAUUGUUGGAUUAGCCGGG-----GGCAGCC---------------CCCAA- ....................((((((.....((((((((.((((....))))))))))))))))))(((-----((...))---------------)))..- ( -27.50) >consensus UGCCAUUAGAAUCGAUUUUCGGCCAAAACUUUUCGACAACUGUCAUUAGGCAUUGUUGGAUUAGCCGGAUGAG_GGUGGGCGG_________G_UGUACGAA (((((((......)))..(((((........((((((((.((((....))))))))))))...)))))......))))........................ (-17.45 = -16.95 + -0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:44:22 2006