Locus 520

Sequence ID 3L_DroMel_CAF1
Location 1,530,433 – 1,530,523
Length 90
Max. P 0.652567
window778

overview

Window 8

Location 1,530,433 – 1,530,523
Length 90
Sequences 6
Columns 107
Reading direction reverse
Mean pairwise identity 82.72
Mean single sequence MFE -26.03
Consensus MFE -17.73
Energy contribution -18.07
Covariance contribution 0.34
Combinations/Pair 1.29
Mean z-score -1.96
Structure conservation index 0.68
SVM decision value 0.25
SVM RNA-class probability 0.652567
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 1530433 90 - 23771897
CCUACGCA------CCGAACACGAAGUUCAUUGAGAAGCCGAAACAGCUGACUCUGAUAGUGCGUGUGAUCUCUCCAAACACGCGCG-----UGCA------CUCUC
.....(((------(.((((.....))))...(((.(((.......)))..))).....((((((((...........)))))))))-----))).------..... ( -26.60)
>DroVir_CAF1 10819 101 - 1
CCCACACAUGACUGACGAUAAACAGUUUCAUUGAGUAACUGAAACAGCUGACU--AACUGUGCGUGGGCU----UCACAUGCGUACGCCACGAUCAAACUCUCUCUC
.........(((((........))))).....((((...(((.((((......--..))))(((((.((.----......)).))))).....))).))))...... ( -20.00)
>DroSec_CAF1 9338 90 - 1
CCUACGCA------CCGAAUACGAAUUUCAUUGAGCAGCCGAAACAGCUGACUCUGAUAGUGCGUGUGAUCUCUCCAAACACGCGCG-----UGCA------CUCUC
.....(((------(............(((..(((((((.......)))).))))))..((((((((...........)))))))))-----))).------..... ( -27.40)
>DroSim_CAF1 9396 90 - 1
CCUACGCA------CCGAAUACGAAUUUCAUUGAGCAGCCGAAACAGCUGACUCUGAUAGUGCGUGUGAUCUCUCCAAACACGCGCG-----UGCA------CUCUC
.....(((------(............(((..(((((((.......)))).))))))..((((((((...........)))))))))-----))).------..... ( -27.40)
>DroEre_CAF1 9434 90 - 1
CCUACGCA------CCGAAUACGAAUUUCAUUGAGCAGCCGAAACAGCUGACUCUGAUAGUGCGUGUGAUCUCUCCAAACACGCGCG-----UGCA------CUCUC
.....(((------(............(((..(((((((.......)))).))))))..((((((((...........)))))))))-----))).------..... ( -27.40)
>DroYak_CAF1 9504 90 - 1
CCUACGCA------CCGAAUACGAAUUUCAUUGAGCAGCCGAAACAGCUGACUCUGAUAGUGCGUGUGAUCUCUCCAAACACGCGCG-----UGCA------CUCUC
.....(((------(............(((..(((((((.......)))).))))))..((((((((...........)))))))))-----))).------..... ( -27.40)
>consensus
CCUACGCA______CCGAAUACGAAUUUCAUUGAGCAGCCGAAACAGCUGACUCUGAUAGUGCGUGUGAUCUCUCCAAACACGCGCG_____UGCA______CUCUC
.....((.........................(((((((.......)))).))).....((((((((...........)))))))).......))............ (-17.73 = -18.07 +   0.34)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:06 2006