Locus 52

Sequence ID 3L_DroMel_CAF1
Location 181,975 – 182,081
Length 106
Max. P 0.696658
window74

overview

Window 4

Location 181,975 – 182,081
Length 106
Sequences 6
Columns 106
Reading direction forward
Mean pairwise identity 88.93
Mean single sequence MFE -51.27
Consensus MFE -43.91
Energy contribution -42.88
Covariance contribution -1.02
Combinations/Pair 1.32
Mean z-score -1.71
Structure conservation index 0.86
SVM decision value 0.34
SVM RNA-class probability 0.696658
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 181975 106 + 23771897
CGUAGUGGCUCCAUUAGGUGGCCUACCUUUGCGCCGCUUGGUGGGCGGCGGCUGCGGCUCAACAUCCUUGCGCUGAUGCUGUUGCGGCGGCGGAUGGUGCGACUGG
..((((.((.(((((..((.(((((((...((...))..))))))).)).(((((.((.((.((((........)))).))..)).))))).))))).)).)))). ( -49.00)
>DroPse_CAF1 1267 106 + 1
UGUUGUUGCCCCAUUGGGCGGUCUACCUUUACGCCGUUUGGUGGGGGGCGGCUGCGGCUCAACAUCCUUACGCUGUUGCUGCUGCGGCGGCGGAUGAUGCGACUGA
.(((((..((((((..((((((.((....)).))))))..)))))).((.((((((((.(((((.(.....).)))))..)))))))).)).......)))))... ( -50.70)
>DroEre_CAF1 12806 106 + 1
CGUAGUCGCUCCAUUAGGUGGCCUACCCUUACGCCGCUUGGUGGGCGGCGGCUGCGGCUCAACAUCCUUGCGCUGAUGCUGUUGCGGCGGCGGAUGGUGCGACUGG
..(((((((.(((((..((.(((........(((((((.....)))))))((.((((((((.(........).))).))))).))))).)).))))).))))))). ( -52.40)
>DroYak_CAF1 2740 106 + 1
CGUAGUGGCUCCGUUAGGUGGCCUACCUUUGCGCCGCUUGGUGGGCGGCGGCUGCGGCUCAACAUCCUUGCGCUGAUGCUGUUGCGGCGGCGGAUGGUGCGACUGG
..((((.((.(((((..((.(((((((...((...))..))))))).)).(((((.((.((.((((........)))).))..)).))))).))))).)).)))). ( -48.60)
>DroAna_CAF1 11611 106 + 1
CGUGGUCGCCCCGUUGGGGGGCCGGCCUUUGCGCCGCUUGGUGGGCGGCGGCUGCGGCUCAACAUCCUUGCGCUGCUGCUGCGGCGGAGGCGGAUGGUGCGACUGA
...((((((.(((((((....)).((((((((((((((.....))))))(((.(((((.(((.....))).))))).)))...)))))))).))))).)))))).. ( -55.90)
>DroPer_CAF1 5182 106 + 1
UGUUGUUGCCCCAUUGGGCGGUCUACCUUUACGCCGUUUGGUGGGGGGCGGCUGCGGCUCAACAUCCUUACGCUGUUGUUGCUGCGGCGGCGGAUGAUGCGACUGA
.(((((..((((((..((((((.((....)).))))))..)))))).((.((((((((.(((((.(.....).)))))..)))))))).)).......)))))... ( -51.00)
>consensus
CGUAGUCGCCCCAUUAGGUGGCCUACCUUUACGCCGCUUGGUGGGCGGCGGCUGCGGCUCAACAUCCUUGCGCUGAUGCUGCUGCGGCGGCGGAUGGUGCGACUGA
((((((((((((((((((((((.((....)).))))))))))))..))))))))))((....(((((....((((.(((....))).)))))))))..))...... (-43.91 = -42.88 +  -1.02) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:06 2006