Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 181,975 – 182,081 |
Length | 106 |
Max. P | 0.696658 |
Location | 181,975 – 182,081 |
---|---|
Length | 106 |
Sequences | 6 |
Columns | 106 |
Reading direction | forward |
Mean pairwise identity | 88.93 |
Mean single sequence MFE | -51.27 |
Consensus MFE | -43.91 |
Energy contribution | -42.88 |
Covariance contribution | -1.02 |
Combinations/Pair | 1.32 |
Mean z-score | -1.71 |
Structure conservation index | 0.86 |
SVM decision value | 0.34 |
SVM RNA-class probability | 0.696658 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 181975 106 + 23771897 CGUAGUGGCUCCAUUAGGUGGCCUACCUUUGCGCCGCUUGGUGGGCGGCGGCUGCGGCUCAACAUCCUUGCGCUGAUGCUGUUGCGGCGGCGGAUGGUGCGACUGG ..((((.((.(((((..((.(((((((...((...))..))))))).)).(((((.((.((.((((........)))).))..)).))))).))))).)).)))). ( -49.00) >DroPse_CAF1 1267 106 + 1 UGUUGUUGCCCCAUUGGGCGGUCUACCUUUACGCCGUUUGGUGGGGGGCGGCUGCGGCUCAACAUCCUUACGCUGUUGCUGCUGCGGCGGCGGAUGAUGCGACUGA .(((((..((((((..((((((.((....)).))))))..)))))).((.((((((((.(((((.(.....).)))))..)))))))).)).......)))))... ( -50.70) >DroEre_CAF1 12806 106 + 1 CGUAGUCGCUCCAUUAGGUGGCCUACCCUUACGCCGCUUGGUGGGCGGCGGCUGCGGCUCAACAUCCUUGCGCUGAUGCUGUUGCGGCGGCGGAUGGUGCGACUGG ..(((((((.(((((..((.(((........(((((((.....)))))))((.((((((((.(........).))).))))).))))).)).))))).))))))). ( -52.40) >DroYak_CAF1 2740 106 + 1 CGUAGUGGCUCCGUUAGGUGGCCUACCUUUGCGCCGCUUGGUGGGCGGCGGCUGCGGCUCAACAUCCUUGCGCUGAUGCUGUUGCGGCGGCGGAUGGUGCGACUGG ..((((.((.(((((..((.(((((((...((...))..))))))).)).(((((.((.((.((((........)))).))..)).))))).))))).)).)))). ( -48.60) >DroAna_CAF1 11611 106 + 1 CGUGGUCGCCCCGUUGGGGGGCCGGCCUUUGCGCCGCUUGGUGGGCGGCGGCUGCGGCUCAACAUCCUUGCGCUGCUGCUGCGGCGGAGGCGGAUGGUGCGACUGA ...((((((.(((((((....)).((((((((((((((.....))))))(((.(((((.(((.....))).))))).)))...)))))))).))))).)))))).. ( -55.90) >DroPer_CAF1 5182 106 + 1 UGUUGUUGCCCCAUUGGGCGGUCUACCUUUACGCCGUUUGGUGGGGGGCGGCUGCGGCUCAACAUCCUUACGCUGUUGUUGCUGCGGCGGCGGAUGAUGCGACUGA .(((((..((((((..((((((.((....)).))))))..)))))).((.((((((((.(((((.(.....).)))))..)))))))).)).......)))))... ( -51.00) >consensus CGUAGUCGCCCCAUUAGGUGGCCUACCUUUACGCCGCUUGGUGGGCGGCGGCUGCGGCUCAACAUCCUUGCGCUGAUGCUGCUGCGGCGGCGGAUGGUGCGACUGA ((((((((((((((((((((((.((....)).))))))))))))..))))))))))((....(((((....((((.(((....))).)))))))))..))...... (-43.91 = -42.88 + -1.02)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:06 2006