Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 14,326,317 – 14,326,413 |
Length | 96 |
Max. P | 0.962609 |
Location | 14,326,317 – 14,326,413 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 96 |
Reading direction | forward |
Mean pairwise identity | 91.46 |
Mean single sequence MFE | -17.48 |
Consensus MFE | -13.93 |
Energy contribution | -13.93 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.19 |
Structure conservation index | 0.80 |
SVM decision value | 1.54 |
SVM RNA-class probability | 0.962609 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 14326317 96 + 23771897 UCAGCAACAUUCCAUAUGUUGCAUGCCGCACAACCUAGGGCAAAACUUGGUCCACUUCAGAACACUUCAAACCCACAGUGUAACCACAAUAACGCA ...(((((((.....))))))).....((........((((........))))........(((((..........)))))............)). ( -19.40) >DroSec_CAF1 151175 96 + 1 UCAGCAACAUUCCAUAUGUUGCAUGCCGCACAACCUAGCGCAAAACUUGGUCCACUUCAGAACACUUUAAAGCCACAGUGUUACCACAAUAACGCA ...(((((((.....))))))).(((.((........))))).....((((....................))))..((((((......)))))). ( -18.85) >DroSim_CAF1 152658 96 + 1 UCAGCAACAUUCCAUAUGUUGCAUGCCGCACAACCUAGCGCAAAACUUGGUCCACUUCAGAACACUUCAAAGCCACAGUGUUACCACAAUAACGCA ...(((((((.....))))))).(((.((........))))).....((((....................))))..((((((......)))))). ( -18.85) >DroEre_CAF1 151404 96 + 1 UCAGCAACAUUCCAUAUGUUGCAUGCCACACAAACUAGCGCAGAACUUGGUCCACUUCAGAGCACUUCAUACCCACAGUGAAACCAGCAUAACACA ...(((((((.....)))))))((((...........((...(((..........)))...))..(((((.......)))))....))))...... ( -15.60) >DroYak_CAF1 156052 95 + 1 UCAGCAACAUUCCAUAUGUUGCAUGCCACACAAACUAGCGCAGAACUUGGUCCACUUCAGAACAC-UCAUACCCACAGUGAAACCACCGCAACACA ...(((((((.....)))))))...............(((......((((......))))..(((-(.........)))).......)))...... ( -14.70) >consensus UCAGCAACAUUCCAUAUGUUGCAUGCCGCACAACCUAGCGCAAAACUUGGUCCACUUCAGAACACUUCAAACCCACAGUGUAACCACAAUAACGCA ...(((((((.....))))))).((((..........).))).....((((.((((....................))))..)))).......... (-13.93 = -13.93 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:44:21 2006