Locus 5198

Sequence ID 3L_DroMel_CAF1
Location 14,325,781 – 14,325,884
Length 103
Max. P 0.550037
window8228

overview

Window 8

Location 14,325,781 – 14,325,884
Length 103
Sequences 6
Columns 115
Reading direction forward
Mean pairwise identity 81.53
Mean single sequence MFE -33.35
Consensus MFE -19.23
Energy contribution -21.27
Covariance contribution 2.03
Combinations/Pair 1.35
Mean z-score -1.97
Structure conservation index 0.58
SVM decision value 0.03
SVM RNA-class probability 0.550037
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 14325781 103 + 23771897
GAU--UGGGUGUCAGUUUGCUUAUGGCGCUGAAAAGCGCUGUCAGUGCGAAUGAGCGAGGUA----UAGGUGCAGAGUC--GACACUGAACUAAAAUAAGUAU-ACG---CCAUG
...--..(((((.....(((((((((((((....)))))).(((((((((.((.((......----...)).))...))--).))))))......))))))).-)))---))... ( -34.90)
>DroSec_CAF1 150639 103 + 1
GAU--UGGGUGUCAGUGUGCUUAUGGCGCUGAAAAGCGCUGUCAGUGCGAAUGAGCGAGGUA----UAGGUGUAGAGUC--CACACUAAACUAAAAUAAGUAU-ACG---CCAUG
...--..(((((((.((..((.((((((((....)))))))).))..))..)))....(((.----((((((.......--))).))).)))...........-.))---))... ( -31.10)
>DroSim_CAF1 152119 103 + 1
GAU--UGGGUGUCAGUGUGCUUACGGCGCUGAAAAGCGCUGUCAGUGCGAAUGAGCGAGGUA----UAGGUGCAGAGUC--CACACUGAACUAAAAUAAGUAU-ACG---CCAUG
...--..((((((((((((((.((((((((....)))))))).))((((..((.((...)).----))..)))).....--))))))))(((......)))..-.))---))... ( -35.80)
>DroEre_CAF1 150858 109 + 1
GAU--UAGGUGUCAGUCUGCUCAUGGCGUUGAAAAGCGCCGUCAGUGCGAAUGAGCGAGGUA----UAGGUGCAGAAUCUGCACACUGAACGAAAAUAAGUAUUACGUAUCCACG
...--...((((((((.(((((((((((((....))))))((....))..))))))).....----...((((((...)))))))))))(((.............)))...))). ( -33.12)
>DroYak_CAF1 155501 109 + 1
GAU--UGGGUGUCAGUGUGCUCAUGGCGAUGAAAAGCGCCGUCAGUGCGAGUGAGCGAGGUAUACAUAGGUGCAGCAUCUGCACACUGAACUAAAUGAAGUAU-ACG---CCACG
...--..(((.(((.((..((.((((((.(....).)))))).))..))..))).....((((((.(((((((((...)))))).)))..(.....)..))))-)))---))... ( -35.40)
>DroAna_CAF1 144118 106 + 1
GAGUGUGUGUGUCGGUGU-UUCCUGUCGCUGAAAAGCGCUGUCAGAGCGAGAGAGACAAGUA----CAGAAGUGGAAACGGCGCACUUGAAAAAAUUACGUAU-ACG---UCAUG
((((((((.(((...(((-(((.(.(((((....)))(((.....))))).)))))))...)----))....((....))))))))))......((.(((...-.))---).)). ( -29.80)
>consensus
GAU__UGGGUGUCAGUGUGCUCAUGGCGCUGAAAAGCGCUGUCAGUGCGAAUGAGCGAGGUA____UAGGUGCAGAAUC__CACACUGAACUAAAAUAAGUAU_ACG___CCAUG
.....(((...((((((((((.((((((((....)))))))).)))((......))..........................))))))).)))...................... (-19.23 = -21.27 +   2.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:44:20 2006