Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 14,325,004 – 14,325,095 |
Length | 91 |
Max. P | 0.795083 |
Location | 14,325,004 – 14,325,095 |
---|---|
Length | 91 |
Sequences | 4 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 81.24 |
Mean single sequence MFE | -21.87 |
Consensus MFE | -15.32 |
Energy contribution | -15.58 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.00 |
Mean z-score | -1.85 |
Structure conservation index | 0.70 |
SVM decision value | 0.60 |
SVM RNA-class probability | 0.795083 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 14325004 91 - 23771897 --GCCCCCUUAACAUUUUCCUGGCGCACGUGCUGCGGAAAUGAGUUUUGUGUAUUUCACUUUCCAUUUUCCGCGUCUUCUUC------------UACUCCG---UGCU --(((................)))(((((....(((((((.(((....(((.....))).)))...)))))))((.......------------.))..))---))). ( -21.09) >DroSec_CAF1 149870 91 - 1 --GCCCCCUUAACAUUUUCCUGGCGCACGUGCUGCGGAAAUGAGUUUUGUGUAUUUCACUUUCCAUUUUCCGCGUCUUCUUC------------CACUCCG---UGCU --(((................)))(((((....(((((((.(((....(((.....))).)))...)))))))((.......------------.))..))---))). ( -21.19) >DroSim_CAF1 151353 91 - 1 --GCCCCCUUAACAUUUUCCUGGCGCACGUGCUGCGGAAAUGAGUUUUGUGUAUUUCACUUUCCAUUUUCCGCGUCUUCUUC------------CACUCCG---UGCU --(((................)))(((((....(((((((.(((....(((.....))).)))...)))))))((.......------------.))..))---))). ( -21.19) >DroAna_CAF1 143394 101 - 1 GGGCACCC-------CUUGCCGCCGCACGUGCUGCGGAAAUGAGUUUUGUGUAUUUCACUUUCCAUUUUCCGCGCCCGCCUCAAACUCUCCGCCUCCUUCGUCCUCCU ((((....-------...((((.....)).)).(((((((.(((....(((.....))).)))...)))))))))))............................... ( -24.00) >consensus __GCCCCCUUAACAUUUUCCUGGCGCACGUGCUGCGGAAAUGAGUUUUGUGUAUUUCACUUUCCAUUUUCCGCGUCUUCUUC____________CACUCCG___UGCU .....................(((((....)).(((((((.(((....(((.....))).)))...))))))))))................................ (-15.32 = -15.58 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:44:19 2006