Locus 5194

Sequence ID 3L_DroMel_CAF1
Location 14,312,554 – 14,312,658
Length 104
Max. P 0.670863
window8222

overview

Window 2

Location 14,312,554 – 14,312,658
Length 104
Sequences 6
Columns 104
Reading direction reverse
Mean pairwise identity 93.14
Mean single sequence MFE -23.50
Consensus MFE -19.89
Energy contribution -20.75
Covariance contribution 0.86
Combinations/Pair 1.04
Mean z-score -1.73
Structure conservation index 0.85
SVM decision value 0.29
SVM RNA-class probability 0.670863
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 14312554 104 - 23771897
CACACACAGAGUGGCCUUUUAUUUCAUAUACACAAUCAUUUCAGUGGUGCCAGUGCUUAUCUUUUAUGUAAAUUUAUGAACCAGUCUGGGGCCACUCAAAAAAG
........((((((((..................(((((....))))).((((.(((.....((((((......))))))..)))))))))))))))....... ( -26.40)
>DroSec_CAF1 137317 104 - 1
CACACACAGAGUGGCCUUUUAUUUCAUAUACACAAUCAUUUCAGUGGUGCCAGUGCUUAUCUUUUAUGUAAAUUUAUGAACCAGUCUGGGGCCACUCAAAAAAG
........((((((((..................(((((....))))).((((.(((.....((((((......))))))..)))))))))))))))....... ( -26.40)
>DroSim_CAF1 137815 104 - 1
CACACACAGAGUGGCCUUUUAUUUCAUAUACACAAUCAUUUCAGUGGUGCCAGUGCUUAUCUUUUAUGUAAAUUUAUGAACCAGUCCGGGGCCACUCAAAAAAG
........((((((((......((((((((((..(((((....)))))((....))..........))))....))))))((.....))))))))))....... ( -24.70)
>DroEre_CAF1 137626 104 - 1
CACACACAGAGUGGCCUUUUAUUUCAUACACACAAUCAUUUCAGUGGUGCCAGUGCUUAUCUUUUAUGUAAAUUUAUGAACCAGUCUGGGACCACUCAAAAAAG
..(((.....))).........................(((.((((((.((((.(((.....((((((......))))))..))))))).)))))).))).... ( -21.30)
>DroYak_CAF1 141758 104 - 1
CACACACAGAGUGGCCUUUUAUUUCAUAUACACAAUCAUUUCGGUGGUGCCAGUGCUUAUCUUUUAUGUAAAUUUAUGAACCAGUCUGGGAGCACUCAAAAAAG
(((.(((.((((((.....(((.....))).....))))))..))))))..(((((((....((((((......))))))((.....)))))))))........ ( -18.30)
>DroAna_CAF1 131327 98 - 1
------CGAAGUGGCCAUAUAUUUUCCAUACACAAUAAUUUCUGUGGUGCCAGUGUUUAUCUUUUAUGUAAAUUUAUGAACCAGUCUGGGGCCACUCAAAAAAG
------.((.((((((..........(((.((((........)))))))((((.((((((..(((....)))...))))))....))))))))))))....... ( -23.90)
>consensus
CACACACAGAGUGGCCUUUUAUUUCAUAUACACAAUCAUUUCAGUGGUGCCAGUGCUUAUCUUUUAUGUAAAUUUAUGAACCAGUCUGGGGCCACUCAAAAAAG
........((((((((..................(((((....))))).((((.(((.....((((((......))))))..)))))))))))))))....... (-19.89 = -20.75 +   0.86)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:44:15 2006