| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 14,311,157 – 14,311,267 |
| Length | 110 |
| Max. P | 0.913875 |
| Location | 14,311,157 – 14,311,267 |
|---|---|
| Length | 110 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 66.49 |
| Mean single sequence MFE | -22.82 |
| Consensus MFE | -11.47 |
| Energy contribution | -11.75 |
| Covariance contribution | 0.28 |
| Combinations/Pair | 1.56 |
| Mean z-score | -1.76 |
| Structure conservation index | 0.50 |
| SVM decision value | 1.09 |
| SVM RNA-class probability | 0.913875 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 14311157 110 - 23771897 UUCAUUAAAUGUUCAUUCGCUAUUCAACUAAUUUACCACAAUCUUUUUUC-UAAAUGCCGAUUCUUCAUGGUCACUGAA--AACCCCUCAUCCCGGUGAGGGGUUAAGACGUG ........(((((..................................(((-.....((((........))))....)))--((((((((((....))))))))))..))))). ( -22.00) >DroSec_CAF1 135886 112 - 1 UUCAUUUUAUGUUCAUUCGCUAUUCAACUAAUUCACCACAAUCUUUUUUC-UAAAUGCCGUUUCUUCAUGGUCACUGAAAAACCCCUCCAACCCGGUGAGGGGUUAAGACGUG .......((((((.................................((((-.....(((((......)))))....))))(((((((((......).))))))))..)))))) ( -20.90) >DroSim_CAF1 136229 112 - 1 UUCAUUUUAUGUUCAUUCUCUAUUCAACUUAUUUACCACAAUCUUUUUUC-UAAAUGCCGAUUCUUCAUGGUCACUAGAAAAACCCCUCAUCCCGGUGAGGGGUUAAGACGUG .......((((((.................................((((-((...((((........))))...))))))((((((((((....))))))))))..)))))) ( -26.00) >DroEre_CAF1 136248 95 - 1 UUAAUUU-----UCCACUUC-----------UGUGUCACAGUCUUUUUUC-UAAAUGCCGAUUCUUCAUGGUCAGAGAAA-AACCCCCCAAACCGGUGGGGGGUUAAGCCGUG .......-----..(((...-----------.))).(((.((....((((-(...(((((........))).)).)))))-(((((((((......)))))))))..)).))) ( -26.00) >DroYak_CAF1 140364 96 - 1 UUCAUUU-----UCCUUCUC-----------UAUAUCACAAUCUUUAUUCUUAAAUGUCCAUUCUUCAUGGUCACAGAAA-AAGCACCCAAUUCGUUGGGGGGUUAAGCCGUG .......-----........-----------.....(((...((((.((((....((.((((.....)))).)).)))))-)))..(((((....))))).((.....))))) ( -15.40) >DroAna_CAF1 130006 94 - 1 UUCUUUUCUUAUCGAUUUAAGAGUAAACCAG---ACCCCAAGCUUU-------AAUGCCAUU-----GUGGCCAGCCAU--GGCCUCCCCUACCAUGGCGGGUUUAAGCCA-- .....((((((......))))))......((---((((........-------...(((...-----..)))..(((((--((.........)))))))))))))......-- ( -26.60) >consensus UUCAUUU_AUGUUCAUUCUCUAUUCAACUAAUUUACCACAAUCUUUUUUC_UAAAUGCCGAUUCUUCAUGGUCACUGAAA_AACCCCCCAACCCGGUGAGGGGUUAAGACGUG ....................................(((.................((((........)))).........(((((((((......))))))))).....))) (-11.47 = -11.75 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:44:14 2006