Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 14,300,978 – 14,301,072 |
Length | 94 |
Max. P | 0.512961 |
Location | 14,300,978 – 14,301,072 |
---|---|
Length | 94 |
Sequences | 3 |
Columns | 94 |
Reading direction | forward |
Mean pairwise identity | 98.58 |
Mean single sequence MFE | -14.23 |
Consensus MFE | -13.13 |
Energy contribution | -13.47 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -1.62 |
Structure conservation index | 0.92 |
SVM decision value | -0.04 |
SVM RNA-class probability | 0.512961 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 14300978 94 + 23771897 GCAAUCAGCAAGUACAACAACCAACAACGACAACUUGAACCAAUAGGAAACAGCACAAACAACACUUUGCAUGUGUAGCCGAGGUUCCCCAAAC ((.....))...........................(((((....(....).(((((..(((....)))..)))))......)))))....... ( -14.70) >DroSec_CAF1 125807 94 + 1 GCAAUCAGCAACUACAACAACCAACAACGACAACUUGAACCAAUAGGAAACAGCACAAACAACACUUUGCAUGUGUAGCCGAGGUUCCCCAAAC ((.....))...........................(((((....(....).(((((..(((....)))..)))))......)))))....... ( -14.70) >DroEre_CAF1 126095 94 + 1 GCAAUCAGCAACUACAACAACCAACAACGACAACUUCAACCAAUAGGAAACAGCACAAACAACACUUUGCAUGUGUAGCCGAGGUUCCCCAAAC ((.....))......................((((((........(....).(((((..(((....)))..)))))....))))))........ ( -13.30) >consensus GCAAUCAGCAACUACAACAACCAACAACGACAACUUGAACCAAUAGGAAACAGCACAAACAACACUUUGCAUGUGUAGCCGAGGUUCCCCAAAC ((.....))...........................(((((....(....).(((((..(((....)))..)))))......)))))....... (-13.13 = -13.47 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:44:13 2006