Locus 5190

Sequence ID 3L_DroMel_CAF1
Location 14,295,533 – 14,295,641
Length 108
Max. P 0.896576
window8218

overview

Window 8

Location 14,295,533 – 14,295,641
Length 108
Sequences 6
Columns 111
Reading direction forward
Mean pairwise identity 90.15
Mean single sequence MFE -24.36
Consensus MFE -21.46
Energy contribution -21.19
Covariance contribution -0.27
Combinations/Pair 1.28
Mean z-score -1.84
Structure conservation index 0.88
SVM decision value 0.99
SVM RNA-class probability 0.896576
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 14295533 108 + 23771897
AGCCGAU--AAAUACAAAUGAAAUUAAAUAUAAUUUUAGUACGGCU-UAGAUUCGCUUCGGGUGGGUCAAACAAAAUGUUUGCCAAUUACAAACCCAUUUCGAAACGCUUU
(((((..--...(((...((((((((....))))))))))))))))-......((.((((((((((((((((.....)))))..........))))).)))))).)).... ( -23.10)
>DroSec_CAF1 120630 108 + 1
AGCCGAU--AAAUACAAAUGAAAUUAAAUAUAAUUUUAGUACGGCU-UAGAUUCGCUUUGGGUGGGUCAAACAAAAUGUUUGCCAAUUACAAACCCAUUCCGAAGUGCUUU
(((((..--...(((...((((((((....))))))))))))))))-......(((((((((((((((((((.....)))))..........))))).))))))))).... ( -28.50)
>DroSim_CAF1 120817 108 + 1
AGCCGAU--AAAUACAAAUGAAAUUAAAUAUAAUUUUAGUACGGCU-UAGAUUCGCUUCGGGUGGGUCAAACAAAAUGUUUGCCAAUUACAAACCCAUUUCGAAGUGCUUU
(((((..--...(((...((((((((....))))))))))))))))-......(((((((((((((((((((.....)))))..........))))).))))))))).... ( -27.80)
>DroEre_CAF1 120724 111 + 1
AGCCGAUAUAAAUACAAAUGAAAUUAAAUAUAAUUUUAGUACGGCUGUGGAUUCGUUUCGGGUGGGUCAAACAAAAUGUUUGCCAAUUACAAACCCAUUUCGAAGUGUUUU
(((((.(((.........((((((((....))))))))))))))))...((..(((((((((((((((((((.....)))))..........))))).)))))))))..)) ( -23.80)
>DroYak_CAF1 124654 108 + 1
AGCCGAU--AAAUACAAAUGAAAUUAAAUAUAAUUUUAGUACGGCU-UGAAUUCGCUUCGGGUGGGUCAAACAAAAUGUUGGCCAAUUACAAAUCCAUUUCGAAGUGUUUU
(((((..--...(((...((((((((....))))))))))))))))-..((..(((((((((..((((((........))))))..............)))))))))..)) ( -22.79)
>DroAna_CAF1 115419 108 + 1
AGCCGAU--AAACUCAAAUGAAAUUAAAUAUUAUUUCAAUUCGAUU-UAGAUUCGCUUCGGGCGGGUCAGACCAAGUGCCUGCCAAUUACAAAGCCGUUUCAAAGUGUUUA
......(--((((.(...((((((........))))))........-..((..(((((..(((((((..........))))))).......))).))..))...).))))) ( -20.20)
>consensus
AGCCGAU__AAAUACAAAUGAAAUUAAAUAUAAUUUUAGUACGGCU_UAGAUUCGCUUCGGGUGGGUCAAACAAAAUGUUUGCCAAUUACAAACCCAUUUCGAAGUGCUUU
(((((.............((((((((....))))))))...))))).......(((((((((((((((((((.....)))))..........))))).))))))))).... (-21.46 = -21.19 +  -0.27)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:44:11 2006