Locus 5188

Sequence ID 3L_DroMel_CAF1
Location 14,288,911 – 14,289,012
Length 101
Max. P 0.963603
window8214

overview

Window 4

Location 14,288,911 – 14,289,012
Length 101
Sequences 5
Columns 102
Reading direction reverse
Mean pairwise identity 92.56
Mean single sequence MFE -23.76
Consensus MFE -20.62
Energy contribution -21.42
Covariance contribution 0.80
Combinations/Pair 1.00
Mean z-score -1.72
Structure conservation index 0.87
SVM decision value 1.56
SVM RNA-class probability 0.963603
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 14288911 101 - 23771897
CACCCAAAAAAAAAAGCAACUGACAGGAUAUUAGAAAUAAACAGAACAGCAGGAUGCCACCCGUAAGGGCGGUACUU-UAGUGAGUUUAUACAGGGUAUGUG
.((((..............((((.......))))..((((((...((...(((.((((.(((....))).)))))))-..))..))))))...))))..... ( -24.50)
>DroSec_CAF1 114125 99 - 1
CGCCCAAAA--AAAAGCAACUGACAGGAUAUUAGAAAUAAACAGAACAGCAGGAUGCCACCCGUAAGGGCGGUACUU-UAGUGAGUUUAUACAGGGUAUGUG
.((((....--........((((.......))))..((((((...((...(((.((((.(((....))).)))))))-..))..))))))...))))..... ( -24.80)
>DroSim_CAF1 114282 100 - 1
CUCCCAAAA-AAAAAGCAACUGACAGGAUAUUAGAAAUAAACAGAACAGCAGGAUGCCACCCGUAAGGCCGGUACUU-UAGUGAGUUUAUACAGGGUAUGUC
..(((....-.........((((.......))))..((((((...((...(((.((((..((....))..)))))))-..))..))))))...)))...... ( -17.30)
>DroEre_CAF1 114260 101 - 1
GUCCCAAAA-AAAAAGCAACUGACAGGAUAUUAGAAAUAAACAGAACAGCAGGAUGCCACCCGUAAGGGAGGUACUCCUGGUGAACUUAUUCAGGGUAUAUG
..(((....-.....((....).).((((((((....)))......((.(((((((((.(((....))).)))).))))).))....))))).)))...... ( -28.90)
>DroYak_CAF1 118207 100 - 1
CUCCCAAAA-AAAAAGCAACUGACAGGAUAUUAGAAAUAAACAGAACAGCAGGAUGCCGCCCGUAAGGGAGGUACUU-UAGUCGGUUUAUACAGGGUAUAUG
..(((....-.........((((.......))))..((((((.((.....(((.((((.(((....))).)))))))-...)).))))))...)))...... ( -23.30)
>consensus
CUCCCAAAA_AAAAAGCAACUGACAGGAUAUUAGAAAUAAACAGAACAGCAGGAUGCCACCCGUAAGGGCGGUACUU_UAGUGAGUUUAUACAGGGUAUGUG
..(((..............((((.......))))..((((((...((...(((.((((.(((....))).)))))))...))..))))))...)))...... (-20.62 = -21.42 +   0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:44:07 2006