| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 14,266,972 – 14,267,074 |
| Length | 102 |
| Max. P | 0.923060 |
| Location | 14,266,972 – 14,267,074 |
|---|---|
| Length | 102 |
| Sequences | 3 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 66.17 |
| Mean single sequence MFE | -18.66 |
| Consensus MFE | -10.16 |
| Energy contribution | -10.83 |
| Covariance contribution | 0.67 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.67 |
| Structure conservation index | 0.54 |
| SVM decision value | 1.15 |
| SVM RNA-class probability | 0.923060 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 14266972 102 + 23771897 AACAUAGUAUCUUAAGCUGCUAAGCACGAUAUAGGUUAGGAGAAAACUAGAAGGUACGGAAAAGA-UAAAGAUAUUAAAAAAUU-------UUAUCAGAAAUCU-AACA----UG ....(((((((((..(((....))).((.(((...((((.......))))...))))).......-..))))))))).......-------.............-....----.. ( -15.40) >DroEre_CAF1 96542 102 + 1 AAGAGAGUAUCUUAAACUGCUUAGCACGAUUAGGUUAAGUAGAAUACUAUAAAGUACGGAAAAAGUAUGAGAUAUAA---AU----------UAUCAAUCAGUUUCGUACUGAAA ((((.....))))...(((((((((.(.....))))))))))..........(((((((((......(((((((...---..----------))))..))).))))))))).... ( -23.80) >DroYak_CAF1 100250 113 + 1 AACAGAGUAUCUUAAACAGCUUAGCACGAUUGGGUUAAGGAGUAUACUAGAAAGUGCGGAAAAA-CAUAAGAUAUUAUACAUUCAAUAUAUGUAUCAAACAUUU-UUUACUAAAG .....(((((((((.........((((.....(((..........))).....)))).......-..)))))))))((((((.......)))))).........-.......... ( -16.77) >consensus AACAGAGUAUCUUAAACUGCUUAGCACGAUUAGGUUAAGGAGAAUACUAGAAAGUACGGAAAAA__AUAAGAUAUUA_A_AUU_________UAUCAAACAUUU_AAUACU_AAG .....(((((((((..((.((((((........)))))).))..((((....))))...........)))))))))....................................... (-10.16 = -10.83 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:43:57 2006