Locus 5181

Sequence ID 3L_DroMel_CAF1
Location 14,258,147 – 14,258,241
Length 94
Max. P 0.998385
window8202

overview

Window 2

Location 14,258,147 – 14,258,241
Length 94
Sequences 5
Columns 96
Reading direction forward
Mean pairwise identity 93.03
Mean single sequence MFE -17.38
Consensus MFE -15.40
Energy contribution -15.84
Covariance contribution 0.44
Combinations/Pair 1.05
Mean z-score -2.23
Structure conservation index 0.89
SVM decision value 3.09
SVM RNA-class probability 0.998385
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 14258147 94 + 23771897
GC-AAAAAAAAUAAAAUGGAGAACUUUUGUACA-AACAACUUUUCCAUGGUAGUCGUAUUACCAAUGCGAUUAUAUGAAGUCCGAAAAUUAAUCAA
..-............((((((((...((((...-.)))).)))))))).((((((((((.....))))))))))...................... ( -17.60)
>DroSec_CAF1 88714 89 + 1
GU-AAAAAA-----AAUGGAGAACUUUUGUACA-AACAACUUUUCCAUGGUAGUCGUAUUACCAAUGCGAUUAUAUCAAGUCCGAAAAUUAAUCAA
..-......-----.((((((((...((((...-.)))).)))))))).((((((((((.....))))))))))...................... ( -17.60)
>DroSim_CAF1 88801 89 + 1
GU-AAAAAA-----AAUGGAGAACUUUUGUACA-AACAACUUUUCAAUGGUAGUCGUAUUACCAAUGCGAUUAUAUCAAGUCCGAAAAUUAAUCAA
..-......-----..(((((((...((((...-.))))...)))....((((((((((.....))))))))))......))))............ ( -14.90)
>DroEre_CAF1 87962 90 + 1
GU-AAAAAG-----AAUGGAGAACUUUUGUACAAAACAACUUUUCCAUGGUAGUCGUAUUACCAAUGCGAUUAUAUAAAGUCCGAAAAUUAAUCAA
..-.....(-----(((((((((...((((.....)))).)))))))).((((((((((.....))))))))))..................)).. ( -17.90)
>DroYak_CAF1 91589 90 + 1
GUUAAAAAA-----CAUGGAGAACUUUUGCACA-AACAACUUUUCCAUGGCAGUCGCAUUACCAAUGCGAUUAUAUAAAGUCCGAAAAUUAAUCAA
(((((....-----(((((((((...(((....-..))).)))))))))..((((((((.....))))))))................)))))... ( -18.90)
>consensus
GU_AAAAAA_____AAUGGAGAACUUUUGUACA_AACAACUUUUCCAUGGUAGUCGUAUUACCAAUGCGAUUAUAUAAAGUCCGAAAAUUAAUCAA
...............((((((((...((((.....)))).)))))))).((((((((((.....))))))))))...................... (-15.40 = -15.84 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:43:55 2006