Locus 5180

Sequence ID 3L_DroMel_CAF1
Location 14,257,407 – 14,257,511
Length 104
Max. P 0.768248
window8201

overview

Window 1

Location 14,257,407 – 14,257,511
Length 104
Sequences 6
Columns 105
Reading direction reverse
Mean pairwise identity 94.12
Mean single sequence MFE -33.70
Consensus MFE -26.08
Energy contribution -25.88
Covariance contribution -0.19
Combinations/Pair 1.16
Mean z-score -3.15
Structure conservation index 0.77
SVM decision value 0.52
SVM RNA-class probability 0.768248
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 14257407 104 - 23771897
CGCAGGCCACAUUUAUCAGUCAUCGCUGGCGGGGCUUAAAGGUUCUGCUUUUCAAUAAGAUAGAGUACUGAUAGACGAUGAAUAAAUUGGCC-UGAAAAUAAUGU
..(((((((.((((((...(((((((((((((((((....))))))))............(((....))).))).)))))))))))))))))-)).......... ( -33.80)
>DroSec_CAF1 87989 104 - 1
CGCAGGCCACAUUUAUCAGUCAUCGCUGGCGGGGCUUAAAGGUUCUGCUUUUCAAUAAGAUAGAGUACUGAUAGACGAUAAAUAAAUUGGCC-UGAAAAUAAUGU
..(((((((.(((((((.((((((...(((((((((....)))))))))..((.....)).........))).))))))))))....)))))-)).......... ( -31.70)
>DroSim_CAF1 88071 104 - 1
CGCAGGCCACAUUUAUCAGUCAUCGCUGGCGGGGCUUAAAGGUUCUGCUUUUCAAUAAGAUAGAGUACUGAUAGACGAUGAAUAAAUUGGCC-UGAAAAUAAUGU
..(((((((.((((((...(((((((((((((((((....))))))))............(((....))).))).)))))))))))))))))-)).......... ( -33.80)
>DroEre_CAF1 87212 104 - 1
CGCAGGCCACAUUUAUCAGUCAUCGCUUGCGGGGCUUAAAGGUUCUGCUUUUCAAUAAGAUAGAGUACUGAUAGGCGAUGAAUAAAGUGGCC-UGAAAAUAACGA
..((((((((.(((((...(((((((((((((((((....))))))))............(((....)))..))))))))))))))))))))-)).......... ( -39.30)
>DroYak_CAF1 90839 104 - 1
CGCAGGCCACAUUUAUCAGUCAUCGCUGGCGGGGCUUAAAGGUUCUGCUUUUCAAUAAGAUAGAGUACUGAUAGACGUUGAAUAAAGUGGCC-UGAAAAUAACGA
..((((((((.(((((((((..((.(((((((((((....)))))))))........))...))..)))))))))..((.....))))))))-)).......... ( -34.40)
>DroAna_CAF1 83985 105 - 1
CGUGGGCCACAUUUAUCAGUCAUCGCUGGCGGGGCUUAGGGGCUCUGCUUUUCAAUAAGAUAGAGUACUGAUAGACGAUGAAUAAAUUGGCAUUGGAAAAAAUGC
.....((((.((((((...(((((((((((((((((....))))))))............(((....))).))).)))))))))))))))).............. ( -29.20)
>consensus
CGCAGGCCACAUUUAUCAGUCAUCGCUGGCGGGGCUUAAAGGUUCUGCUUUUCAAUAAGAUAGAGUACUGAUAGACGAUGAAUAAAUUGGCC_UGAAAAUAAUGU
..(((((((.(((((((.((((((...(((((((((....)))))))))..((.....)).........))).))))))))))....))))).)).......... (-26.08 = -25.88 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:43:54 2006