Locus 5179

Sequence ID 3L_DroMel_CAF1
Location 14,257,259 – 14,257,350
Length 91
Max. P 0.925484
window8200

overview

Window 0

Location 14,257,259 – 14,257,350
Length 91
Sequences 5
Columns 99
Reading direction forward
Mean pairwise identity 71.26
Mean single sequence MFE -14.60
Consensus MFE -6.06
Energy contribution -8.30
Covariance contribution 2.24
Combinations/Pair 1.27
Mean z-score -2.02
Structure conservation index 0.41
SVM decision value 1.17
SVM RNA-class probability 0.925484
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 14257259 91 + 23771897
-----A---CGUAUAAGGAUUCUACCCUCAUCUCCCAUUAUAAAUAAAUAAUUUAUGUGAUAGAGAGAUGAGGCAAUUAAUCAAACCUCAAAGACGAUA
-----.---........((((....((((((((((.((((((.............)))))).).))))))))).....))))................. ( -18.12)
>DroSec_CAF1 87840 92 + 1
AUCCCA---UCUCAUAGGAUUCUACCCUCAUCUCCGAUUUAA----AAUAAUUUAUGUAAUAGAGAGAUGAGGCAAUUAAUCAAACCUCAAAGACGAUA
......---........((((....((((((((((.((.(((----(....)))).))....).))))))))).....))))................. ( -15.60)
>DroSim_CAF1 87937 77 + 1
AU------------------UCUUUCUUCUUCUCCAAUUAUA----AAUAAUUUAUGUGAUAGAGAAAUGAGGCAAUUAAUCAAACCUCAAAGACGAUA
..------------------....((((.(((((..((((((----.........)))))).))))).(((((............)))))))))..... ( -10.80)
>DroEre_CAF1 87069 86 + 1
AUCAUAAUUUCUUAUCAUACUCAAGCCUCAU---------CA----AUUAAUUUAUGUGGUAGACAGAUGAGGCAAUUAAUCAAACCUCAAACACGCAA
........................(((((((---------(.----.((.(((.....))).))..))))))))......................... ( -13.60)
>DroYak_CAF1 90692 90 + 1
AUCAUA-----UUAUCAUAUUCCAGCCUCCUCUUCGAUUACA----AUUAAUUUAUGUGGCAGACAGAUGAGGCAAUUAAUCAAACCUCAAACACGAAA
......-----.............(((((.(((((..(((((----.........)))))..)).))).)))))......................... ( -14.90)
>consensus
AUC__A_____UUAUAAGAUUCUACCCUCAUCUCCGAUUACA____AAUAAUUUAUGUGAUAGAGAGAUGAGGCAAUUAAUCAAACCUCAAAGACGAUA
.........................(((((((((..((((((.............))))))...))))))))).......................... ( -6.06 =  -8.30 +   2.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:43:53 2006