Locus 5178

Sequence ID 3L_DroMel_CAF1
Location 14,256,937 – 14,257,032
Length 95
Max. P 0.590908
window8199

overview

Window 9

Location 14,256,937 – 14,257,032
Length 95
Sequences 6
Columns 97
Reading direction forward
Mean pairwise identity 83.40
Mean single sequence MFE -30.87
Consensus MFE -21.55
Energy contribution -21.00
Covariance contribution -0.55
Combinations/Pair 1.13
Mean z-score -1.90
Structure conservation index 0.70
SVM decision value 0.12
SVM RNA-class probability 0.590908
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 14256937 95 + 23771897
UCCCACGAUCCUAUGUGUUGACAAAUGGCUUAAAGUUUUCGGUCAUGGGUCGCGUCGAGGGUGAGCUGCCUUUAAUUUGAGGCAAUUUGGGGG--UC
(((((..(((((...(((.(((..((((((.((....)).))))))..))))))...)))))....((((((......))))))...))))).--.. ( -30.00)
>DroPse_CAF1 84580 88 + 1
GCCUCCAAGCCUCAGUGUUGACAAAUGGCUUAAAGUUUUCGGCCAUGGGUCGUUUCA---------UGGCUUUAAUUUGAGGCAAUUUGGAGGGGAC
.((((((((((((((....(((..((((((.((....)).))))))..)))(((...---------.)))......)))))))...))))))).... ( -33.40)
>DroSec_CAF1 87469 95 + 1
ACCCACGAUCCUAUGUGUUGACAAAUGGCUUAAAGUUUUCGGUCAUGGGUCGCGUCUAGGGUAAGCUGCCUUUAAUUUGAGGCAAUUUGGGGG--AC
.((((..((((((..(((.(((..((((((.((....)).))))))..))))))..))))))....((((((......))))))...))))..--.. ( -32.60)
>DroSim_CAF1 87592 95 + 1
ACCCACGAUCAUAUGUGUUGACAAAUGGCUUAAAGUUUUCGGUCAUGGGUCGCGUCGAGGGUAAGCUGCCUUUAAUCUGAGGCAAUUUGGGGG--AC
((((.((((.......((.(((..((((((.((....)).))))))..))))))))).))))....((((((......)))))).........--.. ( -25.61)
>DroAna_CAF1 83643 97 + 1
ACCCUCGAUCCCAUGUGUUGACAAAUGGCUUAAAGUUUUCGGUCAUGGGUCGCGUCGGUGGUAAGCUGCCUUUAAUUUGAGGCAAUUUGGGGGAGAC
.(((((((..((((((((.(((..((((((.((....)).))))))..)))))).).)))).....((((((......))))))..))))))).... ( -31.50)
>DroPer_CAF1 96452 88 + 1
GCCUCCAAGCCUCAGUGUUGACAAAUGGCUUAAAGUUUUCGGCCAUGCGUCGUUUCA---------UGGCUUUAAUUUGAGGCAAUUUGGAGGGGAC
.((((((((((((((....(((..((((((.((....)).))))))..)))(((...---------.)))......)))))))...))))))).... ( -32.10)
>consensus
ACCCACGAUCCUAUGUGUUGACAAAUGGCUUAAAGUUUUCGGUCAUGGGUCGCGUCGAGGGUAAGCUGCCUUUAAUUUGAGGCAAUUUGGGGG__AC
.(((.(((...........(((..((((((.((....)).))))))..)))...............((((((......))))))..))).))).... (-21.55 = -21.00 +  -0.55)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:43:52 2006