Locus 5172

Sequence ID 3L_DroMel_CAF1
Location 14,232,101 – 14,232,205
Length 104
Max. P 0.747809
window8188

overview

Window 8

Location 14,232,101 – 14,232,205
Length 104
Sequences 5
Columns 111
Reading direction reverse
Mean pairwise identity 77.00
Mean single sequence MFE -21.61
Consensus MFE -14.61
Energy contribution -15.21
Covariance contribution 0.60
Combinations/Pair 1.11
Mean z-score -1.60
Structure conservation index 0.68
SVM decision value 0.47
SVM RNA-class probability 0.747809
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 14232101 104 - 23771897
ACAGA-----AACCCAAGGAAAAUUUCAACUUCUAGCAUAGAACCCCCAAAUUGUGCUGGAAAGUAUCUAGGUACAAUUUUCCA-UUAGC-AAUAGUACCUAUUACAAAAG
.....-----.......((((((((.....(((((((((((..........))))))))))).((((....))))))))))))(-(((..-..)))).............. ( -22.00)
>DroSec_CAF1 67205 104 - 1
ACAGA-----AGACCAAGGAAAAUGUCAACUUCUAGCAUAGACCCCGCAAAUUGUGCUGAAAAGUAUCUAGGUACAAUUUUCCA-UUGGC-AAUAGUACCUAUUUAAAAAG
.....-----.(.(((((((((((......(((.(((((((..........))))))))))..((((....)))).))))))).-)))))-.................... ( -20.30)
>DroSim_CAF1 67290 109 - 1
UUGGGCUUCUAUCCCAAGGAAAAUGUCAACUUCUAGCAUAGACGCCCCAAAUUGUGCUGGAAAGUAUCUAGGUACAGUUUUCCA-UUAGC-AAUAGUACCUAUUUAAAAAG
(((((.......)))))(((((((......(((((((((((..........))))))))))).((((....)))).)))))))(-(((..-..)))).............. ( -26.50)
>DroEre_CAF1 66404 100 - 1
AG--A-----AGCCCAAGU-GAAUGUCAACU-CCGGCAUAGAGCCCCCAAAUUGUGCUGGAAAGUAUCUAGGUACAUUUUCCCA-UUAGC-AAUGCUACCUACUAAAAAGU
..--.-----(((....((-.((((.....(-(((((((((..........))))))))))..((((....)))).......))-)).))-...))).............. ( -18.80)
>DroYak_CAF1 69677 93 - 1
AC--A----------------AAUGUCAACUUCCAGCCUAGAGCCUCCAAUAUGUGCUGGAAAGAUUCUAGGUACAUUUUCCCAAAUGGCAAAUGGUACCUAUUACAAGGU
..--.----------------..(((....((((((((...............).)))))))......(((((((((((.((.....)).)))).)))))))..))).... ( -20.46)
>consensus
AC_GA_____AGCCCAAGGAAAAUGUCAACUUCUAGCAUAGACCCCCCAAAUUGUGCUGGAAAGUAUCUAGGUACAAUUUUCCA_UUAGC_AAUAGUACCUAUUAAAAAAG
..............................(((((((((((..........)))))))))))......(((((((....................)))))))......... (-14.61 = -15.21 +   0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:43:42 2006