Locus 5171

Sequence ID 3L_DroMel_CAF1
Location 14,223,648 – 14,223,740
Length 92
Max. P 0.544616
window8187

overview

Window 7

Location 14,223,648 – 14,223,740
Length 92
Sequences 6
Columns 92
Reading direction reverse
Mean pairwise identity 95.43
Mean single sequence MFE -24.28
Consensus MFE -20.67
Energy contribution -20.40
Covariance contribution -0.27
Combinations/Pair 1.14
Mean z-score -1.52
Structure conservation index 0.85
SVM decision value 0.02
SVM RNA-class probability 0.544616
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 14223648 92 - 23771897
GAAAAUUCCCGGCUGAGCGUGAAUAAUUCAUCUAGCCUGAGUUAUAGGCACAGCUUGAGACCGAUGCUAAAAUAUUAGUCGGACACAUUCAG
(((.....((((((((..(((.((((((((.......))))))))...)))((((((....))).)))......)))))))).....))).. ( -23.00)
>DroSec_CAF1 58580 92 - 1
GAAAAUUCCCGGCUGAGCGUGAAUAAUUCAUCUAGCCUGAGUUAUAGGCACAGCUUGAGACCGAUGCUAAAAUAUUAGUCGGACACAUUCAG
(((.....((((((((..(((.((((((((.......))))))))...)))((((((....))).)))......)))))))).....))).. ( -23.00)
>DroSim_CAF1 57442 92 - 1
GAAAAUUCCCGGCUGAGCGUGAAUAAUUCAUCUAGCCUGAGUUAUAGGCACAGCUUGAGACCGAUGCUAAAAUAUUAGUCGGACACAUUCAG
(((.....((((((((..(((.((((((((.......))))))))...)))((((((....))).)))......)))))))).....))).. ( -23.00)
>DroEre_CAF1 57827 92 - 1
GAAAAUUCCCGGCUGAGCGUGAAUAAUUCAUAUAGCCUGAGUUAUAGGCACAGCUUGAGACCGAUGCUAAAAUAUUAGUCGGACACAUUCAG
(((.....((((((((..(((.((((((((.......))))))))...)))((((((....))).)))......)))))))).....))).. ( -23.00)
>DroYak_CAF1 60812 92 - 1
GAAAAUUCCCGGCUGAGCGUGAAUAAUUCAUCUAGCCUGAGUUAUAGGCACAGCUUGAGACUGAUGCUAAAAUAUUAGUCGGACACAUUCAG
(((...(((.(((((.((.(..((((((((.......))))))))).)).)))))...((((((((......)))))))))))....))).. ( -24.80)
>DroAna_CAF1 58418 92 - 1
GGAAAUUCCUGGCUGAGCGUAAAUAAUUCGUCUAGCCUGAGUUAUAGGCACAGCUUGAGACUGAUGCUAAAAUAUUAGUCGAGCAUCGCCAG
...(((((..(((((..((.........))..))))).)))))...(((...((((..((((((((......))))))))))))...))).. ( -28.90)
>consensus
GAAAAUUCCCGGCUGAGCGUGAAUAAUUCAUCUAGCCUGAGUUAUAGGCACAGCUUGAGACCGAUGCUAAAAUAUUAGUCGGACACAUUCAG
(((.....((((((((..(((.((((((((.......))))))))...)))((((((....))).)))......)))))))).....))).. (-20.67 = -20.40 +  -0.27)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:43:41 2006