Locus 5170

Sequence ID 3L_DroMel_CAF1
Location 14,222,391 – 14,222,486
Length 95
Max. P 0.639426
window8186

overview

Window 6

Location 14,222,391 – 14,222,486
Length 95
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 79.17
Mean single sequence MFE -24.73
Consensus MFE -12.88
Energy contribution -13.30
Covariance contribution 0.42
Combinations/Pair 1.11
Mean z-score -2.01
Structure conservation index 0.52
SVM decision value 0.22
SVM RNA-class probability 0.639426
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 14222391 95 + 23771897
----------UU-------UUUCC-UUUUUUUAAU-AAAACAUGCAGCAAUAAAAUUCCAGCUGUGUUUACGUGAUUGGAAAACGAUUUUCCAUAGC------GGCGAGCAUGAAAAAUU
----------((-------((((.-..........-.......(((((............)))))((((.(((...((((((.....))))))..))------)..))))..)))))).. ( -19.60)
>DroVir_CAF1 64407 109 + 1
-UUUUUUCGGCUGCUGUA---UGU-UUUUUUUUAUGAAAACACGCAGCAAUAAAAUUCCAGCUGUGUUUACGUGAUUGGAAAACGAUUUUCCAUGGC------GGCGAGCAUGAAAAAUU
-.((((((((((((((..---(((-((((......)))))))..))))...........))))((((((.(((.((.(((((.....))))))).))------)..)))))))))))).. ( -32.40)
>DroWil_CAF1 70573 110 + 1
UUUU---UUUUU-UU-UACUUUUUU-GGUUUUAAU-AAAACAAGCAGCAAUAAAAUUCCAGCUGUGUUUACGUGAUUGGAAAACGAUUUUCCAGUGCAUAAGGGGUGAG---GGAAAAUG
...(---(((((-((-((((((((.-.........-.((((..(((((............)))))))))..(((((((((((.....)))))))).)))))))))))))---)))))).. ( -25.20)
>DroYak_CAF1 59539 107 + 1
CUUC---AGUUU-UU-CGCUUUUUU-CUUUUUAAU-AAAACACGCAGCAAUAAAAUUCCAGCUGUGUUUACGUGAUUGGAAAACGAUUUUCCAUAGC------GGCGAGCAUGAAAAAUU
.(((---(....-((-(((......-.........-.....(((((((............)))))))...(((...((((((.....))))))..))------))))))..))))..... ( -25.40)
>DroMoj_CAF1 74168 105 + 1
-UUUGUUCGUUU----UG---CUC-UUUUUUUAAUAAAAACACGCAGCAAUAAAAUUCCAGCUGUGUUUACGUGAUUGGAAAACGAUUUUCCAUGGC------GGCGAGCAUGAAAAAUU
-..(((((((..----..---...-................(((((((............)))))))...(((.((.(((((.....))))))).))------))))))))......... ( -25.30)
>DroAna_CAF1 57331 95 + 1
----------UU-------UCAUU-UUUUUUUAAU-AAAACACGCAGCAAUAAAAUUCCAGCUGUGUUUACGUGAUUGGAAAACGAUUUUCCAUAGC------GGCAGGCAUGAAAAAUU
----------((-------((((.-..........-.....(((((((............)))))))...(((...((((((.....))))))..))------)......)))))).... ( -20.50)
>consensus
_UUU____GUUU____U__UUUUU_UUUUUUUAAU_AAAACACGCAGCAAUAAAAUUCCAGCUGUGUUUACGUGAUUGGAAAACGAUUUUCCAUAGC______GGCGAGCAUGAAAAAUU
.........................................(((((((............)))))))...((((..((((((.....))))))..((.......))...))))....... (-12.88 = -13.30 +   0.42)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:43:40 2006