Locus 5169

Sequence ID 3L_DroMel_CAF1
Location 14,217,231 – 14,217,327
Length 96
Max. P 0.609261
window8185

overview

Window 5

Location 14,217,231 – 14,217,327
Length 96
Sequences 5
Columns 104
Reading direction reverse
Mean pairwise identity 73.54
Mean single sequence MFE -20.92
Consensus MFE -11.74
Energy contribution -13.06
Covariance contribution 1.32
Combinations/Pair 1.23
Mean z-score -1.63
Structure conservation index 0.56
SVM decision value 0.15
SVM RNA-class probability 0.609261
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 14217231 96 - 23771897
UUUUAACCCAUUAACAAGUAAAUCAAUGAAAACUUUUUUAUCCUUA--------GCGAUUUUUUGCAAUAACGCAGGGGUGUCUAAACCCCAACAUACAGGGUG
.....((((........((......((((((....)))))).....--------((((....))))......)).(((((......)))))........)))). ( -20.20)
>DroSec_CAF1 52321 96 - 1
UUUUAACCCAUUAACAAGUAAAUCAAUGAAAGAUUUUUUAUCCUUA--------GCGAUUUUUUUCAGAUUCGCAGGGGUGUCUGAACCCCAACAUACAGGGUG
.....((((........(..((((..(((((((..(((((....))--------).))..)))))))))))..).(((((......)))))........)))). ( -24.10)
>DroSim_CAF1 51153 96 - 1
UUUUAACCCAUUAACAAGUAAAUCAAUGAAAGAUUUUUUAUCCUUA--------GCGAUUUUUUUCAGAUUCGCAGGGGUGUCUGAACCCCAACAUACAGGGUG
.....((((........(..((((..(((((((..(((((....))--------).))..)))))))))))..).(((((......)))))........)))). ( -24.10)
>DroEre_CAF1 51553 91 - 1
GGUAC-----------ACAAAAUCAAUAAACCCCUUUAUAUUUAAAUCGAUUUUUUUUUUUUUUU--GCGGCACAGGGGCGUUUGAACCCCAACAUACAGGGUG
.....-----------......((((....(((((.......((((..((........))..)))--)......)))))...))))((((.........)))). ( -12.42)
>DroYak_CAF1 54242 91 - 1
GGUACGCCCAUUAACAACACAAUCAAUAAAAGCUUUUCUAUCUUUA--------GCUUUUUUUUU-----GCACAGGGGUGUCUGAACCCCAGCAUACAGGGUG
....(((((..................(((((((...........)--------))))))....(-----((...(((((......))))).)))....))))) ( -23.80)
>consensus
UUUUAACCCAUUAACAAGUAAAUCAAUGAAAGCUUUUUUAUCCUUA________GCGAUUUUUUUCAGAUGCGCAGGGGUGUCUGAACCCCAACAUACAGGGUG
.....((((.............................................((((............)))).(((((......)))))........)))). (-11.74 = -13.06 +   1.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:43:39 2006