Locus 5168

Sequence ID 3L_DroMel_CAF1
Location 14,216,687 – 14,216,787
Length 100
Max. P 0.530807
window8184

overview

Window 4

Location 14,216,687 – 14,216,787
Length 100
Sequences 6
Columns 118
Reading direction reverse
Mean pairwise identity 77.95
Mean single sequence MFE -20.03
Consensus MFE -11.07
Energy contribution -11.02
Covariance contribution -0.05
Combinations/Pair 1.25
Mean z-score -1.64
Structure conservation index 0.55
SVM decision value -0.01
SVM RNA-class probability 0.530807
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 14216687 100 - 23771897
CGAAUUCAAAUAAUAAAGUCGAAAUUAGUUGCGGUCCGAAAUGGAAGUGGCUAAAUUGGAAUUGCAAUAGUUUUUAUGGCAAA-AAACGCACAAAAAC--AAA---------------
..................((.((.(((((..(..(((.....))).)..))))).)).)).........((((((...((...-....))..))))))--...--------------- ( -18.60)
>DroPse_CAF1 50377 116 - 1
CGAAUUCAAAUAAUAAAGUUGAAAUUAGUUGCGGUUCCAAAUGGAAAUUGCUAAAUUGGAAUUGCAAUAGUUU-UAUGGCACA-AAAAACAACAAUACGCAUACGGAGCGAAUCGGAG
(((.(((..........((((......(((((((((((((.(((......)))..))))))))))))).(((.-...)))...-.....)))).....((.......))))))))... ( -25.60)
>DroSec_CAF1 51781 101 - 1
CGAAUUCAAAUAAUAAAGUCGAAAUUAGUUGCGGUUCGAAAUGGAAGUGGCCAAAUUGGAAUUGCAAUAGUUUUUAUGGUAAAAAAAAGCACAAAAAC--AAA---------------
...........................((((((((((.((.(((......)))..)).)))))))))).((((((.((.(.......).)).))))))--...--------------- ( -17.90)
>DroEre_CAF1 51011 101 - 1
CGAAUUCAAAUAAUAAAGUCGAAAUUAGUUGCGGUCCGAAAUGGAAGUGGCUGAAUUGGAAUUGCAAUAGUUUUAAUGGCAAA-AAACGCACAAAAAC--AAA--------------G
..................((.((.(((((..(..(((.....))).)..))))).)).)).........(((((..((((...-....)).)))))))--...--------------. ( -17.50)
>DroAna_CAF1 52465 88 - 1
CGAGCUCGAAUAAUAAAGUUGAAAUUAGUUGCGGUACGAAAUGGAAAUUGCCGAAUCGGAAUUGCAAUAGUUUUGUGGGGA-------------AAAC--AAA---------------
....(((((((......)))(((((((.(((((((.(((..(((......)))..)))..)))))))))))))).))))..-------------....--...--------------- ( -15.00)
>DroPer_CAF1 58986 116 - 1
CGAAUUCAAAUAAUAAAGUUGAAAUUAGUUGCGGUUCCAAAUGGAAAUUGCUAAAUUGGAAUUGCAAUAGUUU-UAUGGCACA-AAAAACAACAAUACGCAUACGGAGCGAAUCGGAG
(((.(((..........((((......(((((((((((((.(((......)))..))))))))))))).(((.-...)))...-.....)))).....((.......))))))))... ( -25.60)
>consensus
CGAAUUCAAAUAAUAAAGUCGAAAUUAGUUGCGGUUCGAAAUGGAAAUGGCUAAAUUGGAAUUGCAAUAGUUUUUAUGGCAAA_AAAAGCACAAAAAC__AAA_______________
.................((((((((((.(((((((((((..(((......)))..)))).))))))))))))))...)))...................................... (-11.07 = -11.02 +  -0.05)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:43:38 2006