Locus 5166

Sequence ID 3L_DroMel_CAF1
Location 14,208,630 – 14,208,726
Length 96
Max. P 0.550111
window8181

overview

Window 1

Location 14,208,630 – 14,208,726
Length 96
Sequences 6
Columns 117
Reading direction forward
Mean pairwise identity 73.82
Mean single sequence MFE -26.40
Consensus MFE -9.43
Energy contribution -9.38
Covariance contribution -0.05
Combinations/Pair 1.20
Mean z-score -2.03
Structure conservation index 0.36
SVM decision value 0.03
SVM RNA-class probability 0.550111
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 14208630 96 + 23771897
UUGUGCAUUGAUUGAAAAUUAAGUUGUGC---------------CGAUUGGGUGGCGCACUCCU------CAAUCUAUCGGCUGAUUUAUCAUUCAAUCAUCCUGUCACGAAAUGUG
(((((((.((((((((...(((((((.((---------------((((((((..(....)..))------))....)))))))))))))...))))))))...)).)))))...... ( -29.10)
>DroSec_CAF1 42385 96 + 1
UUGUGCAUUGAUUGAAAAUUAAGUUGUGC---------------CGAUUGGGUGGCGCACUCUU------GAAUCCAUCGGCCGAUUUAUCAUUCAAUCAUCCUGUCACGAAAUGUG
(((((((.((((((((...(((((((.((---------------((((.((((..((......)------).)))))))))))))))))...))))))))...)).)))))...... ( -33.30)
>DroSim_CAF1 42752 96 + 1
UUGUGCAUUGAUUGAAAAUUAAGUUGUGC---------------CGAUUGGGUGGCGCACUCUU------CAAUCCAUCGGCCUAUUUAUCAUUCAAUCAUCCUGUCACGAAAUGUG
(((((((.((((((((...(((((.(.((---------------((((.((((...........------..))))))))))).)))))...))))))))...)).)))))...... ( -29.12)
>DroYak_CAF1 45423 102 + 1
UUGUGCAUUGAUUGAAAAUUAAGUUGUGC---------------CAAUUGGGUGGCGCACUCCUAUAUAUCAAUCUAUAGGCCGAUUCAUCAUUCAAUCAAACCGUCACGAAAUGUG
((((((.(((((((((.....(((.((((---------------((......)))))))))((((((........))))))...........)))))))))...).)))))...... ( -26.70)
>DroAna_CAF1 41475 77 + 1
UGGCACAUUGAUUGAAAAUUAAGUUGUGC---------------CGAUUGGGUGGCUC-------------------------CAUCCAUCAUUCAAUCAGCCCGUCACGAAAUGUG
.(((((((((((.....)))))..)))))---------------)(((.(((((....-------------------------)))))))).......................... ( -19.40)
>DroPer_CAF1 51424 113 + 1
UUAUGCUUUGAUUGAAAAUUAAGUUGUGCCCCGACUUUUCCAGCCGAUUGGGUGGCUCGCUUCAUUCUU-CCAC---UCGUCCACUCGUCCACUCAAUCACUUGCUCACGAUAUGUG
....((..(((((((.....((((((.....))))))........(..(((((((..((..........-....---.)).)))))))..)..)))))))...))............ ( -20.76)
>consensus
UUGUGCAUUGAUUGAAAAUUAAGUUGUGC_______________CGAUUGGGUGGCGCACUCCU______CAAUC_AUCGGCCGAUUUAUCAUUCAAUCAUCCUGUCACGAAAUGUG
..((((((((((.....)))))..)))))................((((((((((..................................)))))))))).................. ( -9.43 =  -9.38 +  -0.05)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:43:35 2006