| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 14,202,616 – 14,202,728 |
| Length | 112 |
| Max. P | 0.500000 |
| Location | 14,202,616 – 14,202,728 |
|---|---|
| Length | 112 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 82.74 |
| Mean single sequence MFE | -43.10 |
| Consensus MFE | -27.68 |
| Energy contribution | -29.10 |
| Covariance contribution | 1.42 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.74 |
| Structure conservation index | 0.64 |
| SVM decision value | -0.06 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 14202616 112 - 23771897 CAUCACCACCUUAUUCUGCACCACCGGCCUUCCGUGGUGGAUCAGAGUACCGGUGGCCUGGUGAUGGGUCACCUUCACCGGUGGAUUGCCAGCUUGCACCGACUGUAUGCCA .....(((((.(((((((((((((.((....))))))))...)))))))..))))).(((((((.((....)).)))))))(((....)))((.((((.....)))).)).. ( -42.70) >DroPse_CAF1 36830 112 - 1 CAUCACCACCUUGUUCUGCACCACCGGGCGCCCCUGGUGGAGUAGUGAGCCGGUGGCCUGGUGAUUUAUCACCCUCACCUGUGGAUCAUUAGCUUGCAGCGACUGUAGGCCA .....(((((((...((((.((((((((....)))))))).)))).)))..(((((...(((((....))))).))))).)))).......((((((((...)))))))).. ( -45.80) >DroSec_CAF1 36290 112 - 1 CAUCACCACCUUAUUCUGCACCAACGGCCUUCCGUGGUGGAUCAGAGUACCGGUGGCCUGGUGAUGGGUCACCUUCACCGGUGGAUUGCCAGCUUGCACCGACUGUAUGCCA .....(((((.((((((((((((.(((....))))))))...)))))))..))))).(((((((.((....)).)))))))(((....)))((.((((.....)))).)).. ( -42.70) >DroEre_CAF1 37807 112 - 1 CAUCACCACCUUAUUGUGCACCACCGGUCUUCCGUGGUGGAUCAGUGUACCGGUUGCCUGAUGUUGGGUCACCUUCACCGGUGGAUGGCCAGCUUGCAGCGACUGUAGGCCA ..((((((((.((((((.((((((.((....)))))))).).)))))....(((.((((......)))).)))......))))).)))...((((((((...)))))))).. ( -42.20) >DroWil_CAF1 48788 112 - 1 CAUGACGACUUUAUUCUGGACCACAGGCUGUCCGCGUUGCAGCAGGGUGGCCGUUGCCACAUGAUUUAUCACUCUCACCUGUGGAUCAUCAGUUUGCAGCGAUUGUGGGCCA .................((.((((((((..(((((......)).)))..)))(((((....((((...((((........))))...))))....)))))...))))).)). ( -38.60) >DroYak_CAF1 39236 112 - 1 CAUCACCACCUUAUUGUGCACCACUGGCCUUCCGUGGUGGAUCAGGGUGCCGGUGGCCUGGUGUUGGGUAACCUUCACCGGUGGAUUGCCAGCUUGCAGCGACUGUAGGCCA .....(((((..........((((((((...((.(((....))).)).))))))))...((((..((....))..))))))))).......((((((((...)))))))).. ( -46.60) >consensus CAUCACCACCUUAUUCUGCACCACCGGCCUUCCGUGGUGGAUCAGAGUACCGGUGGCCUGGUGAUGGGUCACCUUCACCGGUGGAUUGCCAGCUUGCAGCGACUGUAGGCCA ((((((((((.((((((((((((.(((....))))))))...)))))))..)))))..))))).....(((((......))))).......(((((((.....))))))).. (-27.68 = -29.10 + 1.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:43:34 2006