Locus 5164

Sequence ID 3L_DroMel_CAF1
Location 14,199,440 – 14,199,532
Length 92
Max. P 0.936269
window8179

overview

Window 9

Location 14,199,440 – 14,199,532
Length 92
Sequences 6
Columns 92
Reading direction reverse
Mean pairwise identity 80.65
Mean single sequence MFE -36.60
Consensus MFE -24.52
Energy contribution -25.88
Covariance contribution 1.37
Combinations/Pair 1.32
Mean z-score -2.70
Structure conservation index 0.67
SVM decision value 1.25
SVM RNA-class probability 0.936269
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 14199440 92 - 23771897
GUAGUGGUCGUGCCACCCAUCAGAAGAUGGAAACAAUUUCUGGUGGGUACUCGCUUGGGCAUUGAUGUAGAUGCGGGUGCGCUGGUGGUACG
........((((((((((((((((((.((....)).))))))))).((((((((....(((....)))....))))))))...))))))))) ( -45.10)
>DroGri_CAF1 43763 86 - 1
GGUGUCGUAACGCUGGCCAGUAGCAACUGAUGACAGUUCUUGGAGGCCAUGCGAUUGG---UUGAGCUAGUUGUGGU--CUCUGCUGGUGC-
(((((....))))).((((((((.(((((....))))))).(((((((..((((((((---.....)))))))))))--))))))))))..- ( -33.10)
>DroSec_CAF1 33218 92 - 1
GUGGUGGUUAUGCCACCCAUCAGAAGAUGGAAACAAUUCCUGGUGGGUACUCGCUUGGGCAUUGAUGUAGAUGCGGGUGCGCUGGUGGUACG
..........(((((((((((((.((.((....)).)).)))))).((((((((....(((....)))....))))))))...))))))).. ( -36.30)
>DroSim_CAF1 33648 92 - 1
GUGGUGGUCGUGCCACCCAUCAGAAGAUGGAAACAAUUCCUGUUGGGUACUCGCUUGGGCAUUGAUGUAGAUGCGGGUGCGCUGGUGGUACG
........(((((((((((.(((.((.((....)).)).))).)).((((((((....(((....)))....))))))))...))))))))) ( -36.80)
>DroEre_CAF1 34475 92 - 1
GUGGUGGCAAUGCCUCCCAUCAGCAGAUGAAAACAAUUCCUGGUUGGCACUCGCUUGGGCAUUGAUGUAGAGGCGGGUGCACUGGUGGUACG
(.((.(((...))).)))((((.(((.......((((.....))))((((((((((..(((....)))..)))))))))).))).))))... ( -34.40)
>DroYak_CAF1 36191 92 - 1
GUGGUGGCCAUGCCUCCCAUCAGCAGAUGGAAACAAUUCCUCGUUGGCACUCGCUUGGGCAUUGAUGUAGAUGCGGGUGCACUGGUGGUACG
(((..(((...)))..((((((((((..((((....))))...)))((((((((....(((....)))....)))))))).)))))))))). ( -33.90)
>consensus
GUGGUGGUCAUGCCACCCAUCAGAAGAUGGAAACAAUUCCUGGUGGGCACUCGCUUGGGCAUUGAUGUAGAUGCGGGUGCGCUGGUGGUACG
..........(((((((((((((.((.((....)).)).)))))).((((((((....(((....)))....))))))))...))))))).. (-24.52 = -25.88 +   1.37)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:43:33 2006