Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 14,181,282 – 14,181,387 |
Length | 105 |
Max. P | 0.879673 |
Location | 14,181,282 – 14,181,387 |
---|---|
Length | 105 |
Sequences | 6 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 78.27 |
Mean single sequence MFE | -22.52 |
Consensus MFE | -13.90 |
Energy contribution | -15.12 |
Covariance contribution | 1.22 |
Combinations/Pair | 1.38 |
Mean z-score | -1.92 |
Structure conservation index | 0.62 |
SVM decision value | 0.91 |
SVM RNA-class probability | 0.879673 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 14181282 105 + 23771897 AAUAGCAGCAAUUUC-AACCCAUUU--GGGUUAAACGCUUUC-----GUAAAUGCCUUUGAGUAUUUAAUUCCGUUUUUACUUUGGUAUACUUUAAGGAGCAUUUGCAUUAAU ......(((..(((.-(((((....--)))))))).)))...-----((((((((((((((((((......(((.........))).)))).)))))).))))))))...... ( -25.10) >DroSec_CAF1 15571 90 + 1 AAUCGCAGCAAUUUC-AACC-----------------CUUUC-----GUAAAUGCCUUUGAGUAUUUAAUUCCGUUUUUACUUCGGUAUACUUUAAAGAGCAUUUGCAUUAAU ...............-....-----------------.....-----((((((((((((((((((......(((.........))).)))).)))))).))))))))...... ( -19.30) >DroSim_CAF1 15618 105 + 1 AAUCGCAGCAAUUUC-AGCCCAUUU--GGGUUAAACGCUUUC-----GUAAAUGCCUUUGAGUAUUUAAUUCCGUUUUUACUUCGGUAUACUUUAAGGAGCAUUUGCAUUAAU ......(((..(((.-(((((....--)))))))).)))...-----((((((((((((((((((......(((.........))).)))).)))))).))))))))...... ( -26.50) >DroEre_CAF1 16391 105 + 1 AAUCGCAGCAAUUUC-AACCGAUUU--GGGUUAAACGCUUUC-----GUAAAUGCCUUUGAGUAUUUAAUUCCGUUUUUACUUUGGUAUACUUUAAGGAGCAUUUGCAUUAAU ......(((..(((.-((((.....--.))))))).)))...-----((((((((((((((((((......(((.........))).)))).)))))).))))))))...... ( -21.80) >DroYak_CAF1 18077 105 + 1 AAUCGCAGCAAUUUC-AGCCCAUUU--GGGUUAAACGCUUUC-----GUCAAUGCCUUUGAGCAUUUAAUUCAGUUUUUACUUUGGAGCAUUUUAAGGAGCAUUUGCAUUAAU ......(((..(((.-(((((....--)))))))).)))...-----((.((((((((((((.......(((((........)))))....))))))).))))).))...... ( -20.40) >DroAna_CAF1 15287 104 + 1 AAUCAAAAAAUUGUUGCCCCCAUUUUAGGGCUAAACGGUUCCUCUUUUCAAAAGUCUUCAAGUAUUUAGACU---------CUCGGUCUACUUUGAGGCGCAUUUGCAUUAAU ........(((((((((((........))))..))))))).............(((((.((((....((((.---------....)))))))).)))))((....))...... ( -22.00) >consensus AAUCGCAGCAAUUUC_AACCCAUUU__GGGUUAAACGCUUUC_____GUAAAUGCCUUUGAGUAUUUAAUUCCGUUUUUACUUCGGUAUACUUUAAGGAGCAUUUGCAUUAAU ................(((((......)))))...............((((((((((((((((((......(((.........))).)))).)))))).))))))))...... (-13.90 = -15.12 + 1.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:43:22 2006