| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 1,525,786 – 1,525,884 |
| Length | 98 |
| Max. P | 0.615303 |
| Location | 1,525,786 – 1,525,884 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 101 |
| Reading direction | reverse |
| Mean pairwise identity | 81.63 |
| Mean single sequence MFE | -25.23 |
| Consensus MFE | -17.95 |
| Energy contribution | -18.15 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.16 |
| Mean z-score | -1.46 |
| Structure conservation index | 0.71 |
| SVM decision value | 0.17 |
| SVM RNA-class probability | 0.615303 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1525786 98 - 23771897 GACUGCGAUUCGGACUGGGCGGGCUGUCGAAGUCCGUUUGGAAUGUGGAGAGAUCUGACAAUAGAGAUUAAACAUUGAAAU---AUACAAUUGAUUGAUUG ........(((...(..((((((((.....))))))))..)(((((...((..((((....))))..))..))))))))..---...(((((....))))) ( -22.70) >DroPse_CAF1 4258 87 - 1 GACUGCGGUUGGGGCUGGGCGGACUAUCAAAGUCCGUUUGGAAUGUAGAAAGAUCUGAAAGGACAAA---------GGGAU---AUACAUAUG--UAAAUG ..(((((.......(..((((((((.....))))))))..)..))))).....(((....)))....---------.....---.(((....)--)).... ( -21.30) >DroSec_CAF1 4666 98 - 1 GACUGCGAUUCGGACUGGGCGGGCUGUCGAAGUCCGUUUGGAAUGUGGAGAGAUCUAACGAUAGAGAUCAAACAUUGAAAU---AUACAAAUGAUUGAUUG ..(((((.......(..((((((((.....))))))))..)....((((....)))).)).))).((((((.((((.....---.....)))).)))))). ( -26.20) >DroSim_CAF1 4719 98 - 1 GACUGCGAUUCGGACUGGGCGGGCUGUCGAAGUCCGUUUGGAAUGUGGAGAGAUCUAACGAUAGAGAUUAAACAUUGAAAU---AUACAAAUUAUUAAUUG ........(((...(..((((((((.....))))))))..)(((((...((..((((....))))..))..))))))))..---................. ( -22.50) >DroEre_CAF1 4819 97 - 1 GACUGCGAUUCGGACUGGGCGGACUGUCGAAGUCCGUUUGGAAUGUGGAGAGAUCUGGCAAUACAGAUAAGACAUUGAAAUGCCAUACA----AUUGAAUG .......((((((.(..((((((((.....))))))))..)..(((((....(((((......)))))....(((....))))))))..----.)))))). ( -28.10) >DroYak_CAF1 4755 101 - 1 GACUGCGAUUCGGGCUGGGCGGACUGUCGAAGUCCGUUUGGAAUGUGGAGAGAUCUGGCAAUACAGAUUAGUCAUUGUAAUGCUAUACAAGAAAUUGGAUG ...((((((.((..(..((((((((.....))))))))..)..))..((..((((((......))))))..))))))))........(((....))).... ( -30.60) >consensus GACUGCGAUUCGGACUGGGCGGACUGUCGAAGUCCGUUUGGAAUGUGGAGAGAUCUGACAAUACAGAUUAAACAUUGAAAU___AUACAAAUGAUUGAAUG ..(((((.......(..((((((((.....))))))))..)..)))))...(((((........)))))................................ (-17.95 = -18.15 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:00 2006