Locus 5158

Sequence ID 3L_DroMel_CAF1
Location 14,162,434 – 14,162,538
Length 104
Max. P 0.543834
window8160

overview

Window 0

Location 14,162,434 – 14,162,538
Length 104
Sequences 5
Columns 116
Reading direction forward
Mean pairwise identity 91.59
Mean single sequence MFE -31.10
Consensus MFE -26.26
Energy contribution -26.30
Covariance contribution 0.04
Combinations/Pair 1.04
Mean z-score -1.26
Structure conservation index 0.84
SVM decision value 0.02
SVM RNA-class probability 0.543834
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 14162434 104 + 23771897
UGCCUCAUAUUCAUGCGCUCCGUUGUGGCCGUUAAUGAAUUGAAAGUGGCCUGAGAAAUGGUUCAAGGCUGGAUUGGGUCACUUGGUUAAUGGUUAAU-------GGUAAA-----
...............(((......)))(((((((((..(((((((((((((..(....((((.....))))..)..))))))))..))))).))))))-------)))...----- ( -29.10)
>DroSec_CAF1 160078 109 + 1
UGCCUCAUAUUCAUGCGCUCCGUUGUGGCCGUUAAUGAAUUGAAAGUGGCCUGAGAAAUGGUUUAAGGCUGGAUUGGGUCACUUGGUUAAUGGUAAAU-------GGGAAUUAUGG
...........((((...((((((...(((((((((.......((((((((..(....((((.....))))..)..)))))))).))))))))).)))-------)))...)))). ( -31.50)
>DroSim_CAF1 163246 109 + 1
UGCCUCAUAUUCAUGCGCUCCGUUGUGGCCGUUAAUGAAUUGAAAGUGGCCUGAGAAAUGGUUCAAGGCUGGAUUGGGUCACUUGGUUAAUGGUAAAU-------GGGAAUUAUGG
...........((((...((((((...(((((((((.......((((((((..(....((((.....))))..)..)))))))).))))))))).)))-------)))...)))). ( -31.50)
>DroEre_CAF1 161020 109 + 1
UGCCUCAUAUUUAUGCGCUCCAUGGUGGCCGUUAAUGAAUUGAAAGUGGCCUGAGAAAUGGUUCAAGGCUGGAUUGGGUCACUUGGUUAAUGGUAAAC-------GGGAAUUAUGG
.((..(((....))).)).(((((((..(((((.((..(((((((((((((..(....((((.....))))..)..))))))))..))))).)).)))-------))..))))))) ( -31.20)
>DroYak_CAF1 167892 116 + 1
UGCCUCAUAUUUAUGCGCUCCGUGGUGGCCGUUAAUGAAUUGAAAGUGGCCUGAGAAAUGGUUCAAGGCUGGAUUGGGUCACUUGGCUAAUGGCAAAUGGGAAAUGGGAAAUAUGG
.....(((((((......(((((....(((((((.........((((((((..(....((((.....))))..)..))))))))...)))))))..))))).......))))))). ( -32.22)
>consensus
UGCCUCAUAUUCAUGCGCUCCGUUGUGGCCGUUAAUGAAUUGAAAGUGGCCUGAGAAAUGGUUCAAGGCUGGAUUGGGUCACUUGGUUAAUGGUAAAU_______GGGAAUUAUGG
..((...........(((......)))(((((((((.......((((((((..(....((((.....))))..)..)))))))).)))))))))...........))......... (-26.26 = -26.30 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:43:16 2006