Locus 5157

Sequence ID 3L_DroMel_CAF1
Location 14,162,000 – 14,162,110
Length 110
Max. P 0.827727
window8159

overview

Window 9

Location 14,162,000 – 14,162,110
Length 110
Sequences 5
Columns 112
Reading direction reverse
Mean pairwise identity 89.53
Mean single sequence MFE -23.35
Consensus MFE -17.66
Energy contribution -18.60
Covariance contribution 0.94
Combinations/Pair 1.11
Mean z-score -1.98
Structure conservation index 0.76
SVM decision value 0.70
SVM RNA-class probability 0.827727
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 14162000 110 - 23771897
AAACAAUUGAAAAAUUGAACCGAUGAGAACAGCGAAAGAAAAAAGGGGAGAUAUGUACA-UAUAUCUCCUAGA-UGUUCAAUUACUAGCCAGUUGUUUUGUCAGACACACAU
(((((((((...((((((((............(....).......((((((((((....-))))))))))...-.))))))))......))))))))).............. ( -25.80)
>DroSec_CAF1 159659 110 - 1
AAACAAUUGAAAAAUUGAACCGGCGAGAACAGCGAAAGAAAAAAGGGGAGAUAUGUACA-UAUAUCUCCUAGA-UGUUCAAUUACUAGCCAGUUGUUUUGUCAGACACACAU
...(((((....)))))....(((..(((((.(....).......((((((((((....-))))))))))...-)))))........))).((((((......)))).)).. ( -26.80)
>DroSim_CAF1 162819 110 - 1
AAACAAUUGAAAAAUUGAAACGGCGAGAACAGCUAAAGAAAAAAGGGGAGAUAUGUACA-UAUAUCUCAUAGA-UGUUCAAUUACUAGCCAGUUGUUUUGUCAGACACACAU
...(((((....)))))....(((.(((((((((.............((((((((....-)))))))).(((.-((......)))))...)))))))))))).......... ( -23.30)
>DroEre_CAF1 160589 103 - 1
AAACAAUUGAAAAAUUGAACCGAUGAGAACAGAGGAAGAAAAGAGGGGAGAUA---------UAUCGCCUACAUUGUUCAAUUACCAGCAAGUUGUUUUGUCAGACACACAU
...(((((....)))))....(((.(((((((..(((.((...(((.((....---------..)).)))...)).))).............)))))))))).......... ( -17.66)
>DroYak_CAF1 167446 110 - 1
AAACAAUUGAAAAAUUGAACCGCUGGGAACAGAGAAAGAAAA-AGGGGAGAUAUCUGUAGUAUAUCUGCUAGA-UGUUCAAUUACUAGCCAGUUGUUUUGUCAGACACACAU
(((((((((...(((((((((.(((....))).)........-..((.(((((((....).)))))).))...-.))))))))......))))))))).............. ( -23.20)
>consensus
AAACAAUUGAAAAAUUGAACCGAUGAGAACAGCGAAAGAAAAAAGGGGAGAUAUGUACA_UAUAUCUCCUAGA_UGUUCAAUUACUAGCCAGUUGUUUUGUCAGACACACAU
...(((((....)))))....(((.((((((((............((((((((((.....)))))))))).....((......))......))))))))))).......... (-17.66 = -18.60 +   0.94)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:43:15 2006