Locus 5152

Sequence ID 3L_DroMel_CAF1
Location 14,157,874 – 14,157,974
Length 100
Max. P 0.507279
window8148

overview

Window 8

Location 14,157,874 – 14,157,974
Length 100
Sequences 5
Columns 114
Reading direction forward
Mean pairwise identity 87.89
Mean single sequence MFE -23.40
Consensus MFE -17.16
Energy contribution -17.52
Covariance contribution 0.36
Combinations/Pair 1.05
Mean z-score -1.55
Structure conservation index 0.73
SVM decision value -0.05
SVM RNA-class probability 0.507279
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 14157874 100 + 23771897
CAUUGUCAACUAUUUCCGGACCACCUGCCUUAUCCUUGU-----UCUUAUUCCGCAGGAUGCAGCCCUACAAGUGGCUCAUCUGACACUCGAGU---------AUCUUCUGAGU
....(((.........((((......((.........))-----......))))..(((((.(((((.....).))))))))))))((((.((.---------.....)))))) ( -19.90)
>DroSec_CAF1 155550 100 + 1
CAUUGUCAACUAUUUCCGGACCACCUGCCUUAUCGUUGU-----CCUUAUCCCGCAGGAUGCAUCCCUACAAGUGGCUCAUCUUGCACUCGAGU---------AUCUUCUGAGU
.................((((.((..........)).))-----)).......((((((((...(((.....).))..))))))))((((.((.---------.....)))))) ( -20.30)
>DroSim_CAF1 158643 100 + 1
CAUUGUCAACUAUUUCCGGACCACCUGCCUUAUCGUUGU-----CCUUAUCCCGCAGGAUGUAGCCCUACAAGUGGCUCAUCUUGCACUCGAGU---------AUCUUCUGAGU
.................((((.((..........)).))-----)).......((((((((.(((((.....).))))))))))))((((.((.---------.....)))))) ( -26.70)
>DroEre_CAF1 156399 99 + 1
CAUUGUCAGCUACUUCCGGACCACCUGCCUUAUCCUUAUCUU------AUCCCGCAGGAUGCAGUCCUACAAGUGGCUCAUCUUGCACUCGAGU---------AUCUUCUGAGU
((..((.((((((((..(((((((((((..............------.....))))).))..))))...)))))))).))..)).((((.((.---------.....)))))) ( -24.81)
>DroYak_CAF1 163075 114 + 1
CAUUGUCAACUACUUCCGGACCACCUGCCUUAUCCUUAUCUUAUCCUUAUCCCGCAGGAUGCAGUCCUACAAGUGGCUCAUCUUGCACUCGAGUAUCUUGAGUAUCUUCUGAGU
................((((.................................((((((((.(((((.....).))))))))))))(((((((...)))))))....))))... ( -25.30)
>consensus
CAUUGUCAACUAUUUCCGGACCACCUGCCUUAUCCUUGU_____CCUUAUCCCGCAGGAUGCAGCCCUACAAGUGGCUCAUCUUGCACUCGAGU_________AUCUUCUGAGU
.................((........))........................((((((((.(((((.....).))))))))))))(((((((.............))).)))) (-17.16 = -17.52 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:43:05 2006