Locus 5151

Sequence ID 3L_DroMel_CAF1
Location 14,157,573 – 14,157,683
Length 110
Max. P 0.960252
window8147

overview

Window 7

Location 14,157,573 – 14,157,683
Length 110
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 79.51
Mean single sequence MFE -27.89
Consensus MFE -11.44
Energy contribution -12.76
Covariance contribution 1.32
Combinations/Pair 1.09
Mean z-score -2.65
Structure conservation index 0.41
SVM decision value 1.51
SVM RNA-class probability 0.960252
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 14157573 110 + 23771897
UUGCUUGUG---GUGGGACAGUUGUAACAUUUCCACGAAUGCGAAAAUUCGCAAUUGUUUUUAUUUAUUUGUUGAUUUUCGC-------AUUCCCCUUGUGUAGCGCCUGCAAUUCUCCC
((((..(((---((((((..((....))..))))))(((((((((((((.((((.((........)).)))).)))))))))-------))))...........)))..))))....... ( -33.50)
>DroSec_CAF1 155246 113 + 1
UCGCUUGUGGCGGUGUGACAGUUAUAACAUUUCCACGAAUGCGAAAAUUCGCAAUUGUUUUUAUUUAGUUGUUGAUUUUCGC-------AUUCCCCUUGUGUAGCGCCUGCAAUUCUCCC
.((((.((((..((((..........))))..))))(((((((((((((.(((((((........))))))).)))))))))-------)))).........)))).............. ( -36.60)
>DroSim_CAF1 158339 113 + 1
UUGCUUGUGGCGGUGGGACAGUUGUAACAUUUCCACGAAUGCGAAAAUUCGCAAUUGUUUUUAUUUAUUUGUUGAUUUUCGC-------AUUCCCCUUGUGUAGCGCCUGCAAUUCUCCC
((((....((((((((((..((....))..))))))(((((((((((((.((((.((........)).)))).)))))))))-------))))...........)))).))))....... ( -37.30)
>DroEre_CAF1 156108 105 + 1
GUGUUUGU----GUGUGACAGUUUUAACAUUUCCACGAAUGCGAAAAUUCGCAAUUGUUUUUAUUUGUUUGUUGAUUUUCCCCCUGUUGAUUCCCCUUGU-----------AAUUCUCCC
((((((((----(.(((..........)))...)))))))))(((((((.((((..............)))).)))))))....................-----------......... ( -15.24)
>DroAna_CAF1 152770 85 + 1
UUGUGUGU----CUGGGACAGUUGUAACAUUUCCACGAAUGCGAAAAUUCGCAAUUGUUUUUAUU----UGUUGAUUUUUCC-------CCUCCCCUC------------------UC--
........----..((((.((...(((((.....((((.(((((....))))).)))).......----)))))..)).)))-------)........------------------..-- ( -16.80)
>consensus
UUGCUUGUG___GUGGGACAGUUGUAACAUUUCCACGAAUGCGAAAAUUCGCAAUUGUUUUUAUUUAUUUGUUGAUUUUCGC_______AUUCCCCUUGUGUAGCGCCUGCAAUUCUCCC
............((((((..((....))..))))))....(((((((((.((((.((........)).)))).)))))))))...................................... (-11.44 = -12.76 +   1.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:43:04 2006