Locus 5150

Sequence ID 3L_DroMel_CAF1
Location 14,156,730 – 14,156,828
Length 98
Max. P 0.552214
window8146

overview

Window 6

Location 14,156,730 – 14,156,828
Length 98
Sequences 5
Columns 102
Reading direction reverse
Mean pairwise identity 94.28
Mean single sequence MFE -20.26
Consensus MFE -18.22
Energy contribution -18.26
Covariance contribution 0.04
Combinations/Pair 1.05
Mean z-score -1.14
Structure conservation index 0.90
SVM decision value 0.04
SVM RNA-class probability 0.552214
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 14156730 98 - 23771897
CCAAUUGGAGCAGACGAGUGGCUUUAACCGUUAGCUGAA---CAUGAAUUUGGUUAAAAACAAAA-AAAAACGAAUUAUUUGCACUUGGCGAAAAGCCACAA
((....)).........((((((((...((((((.((..---....((((((.............-.....)))))).....)).)))))).)))))))).. ( -20.67)
>DroSec_CAF1 154413 99 - 1
CCAAUUGGAGCAGACGAGUGGCUUUAACCGUUAGCUGAA---CAUGAAUUUGGUUAAAAACAAAACAAAAACGAAUUAUUUGCACUUGGCGAAAAGCCACAA
((....)).........((((((((...((((((.((..---....((((((...................)))))).....)).)))))).)))))))).. ( -20.61)
>DroSim_CAF1 157571 99 - 1
CCAAUUGGAGCAGACGAGUGGCUUUAACCGUUAGCUGAA---CAUGAAUUUGGUUAAAAACAAAACAAAAACGAAUUAUUUGCACUUGGCGAAAAGCCACAA
((....)).........((((((((...((((((.((..---....((((((...................)))))).....)).)))))).)))))))).. ( -20.61)
>DroEre_CAF1 155306 94 - 1
CCAAUUGGAGCAGACGAGUGGCGUUAACCGUUAGCUGAA---CAUGAAUUUGGUUAAAAACAAA----AA-CGAAUUAUUUGCACUUGGCGCAAAGCCGCAA
((....)).(((((..(....((((.....(((((..((---......))..))))).......----))-))..)..)))))....(((.....))).... ( -19.60)
>DroYak_CAF1 161944 98 - 1
CCAAUUGGAGCAGACGAGUGGCGUUAACCGUUAGCUGAACAACAUGAAUUUGGUUAAAAACAAA----AAGCGAAUUAUUUGCACUUGGCGAAAAGCCACAA
((....)).(((((..(.(.((........(((((..((.........))..))))).......----..)).).)..)))))...((((.....))))... ( -19.83)
>consensus
CCAAUUGGAGCAGACGAGUGGCUUUAACCGUUAGCUGAA___CAUGAAUUUGGUUAAAAACAAAA_AAAAACGAAUUAUUUGCACUUGGCGAAAAGCCACAA
((....)).........(((((.(((((((....(((.....)).)....))))))).....................(((((.....)))))..))))).. (-18.22 = -18.26 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:43:03 2006