| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 14,149,707 – 14,149,821 |
| Length | 114 |
| Max. P | 0.890495 |
| Location | 14,149,707 – 14,149,821 |
|---|---|
| Length | 114 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 93.69 |
| Mean single sequence MFE | -31.45 |
| Consensus MFE | -27.18 |
| Energy contribution | -27.48 |
| Covariance contribution | 0.31 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.89 |
| Structure conservation index | 0.86 |
| SVM decision value | 0.96 |
| SVM RNA-class probability | 0.890495 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 14149707 114 - 23771897 AAAAGGUGUGUAAUUACACGGCCAGGACA----CAAUGGCAAAGCCAAUCGCCAAAGCUGGGAACAUACUUUCUGGCCACACUGUGACACAUUCAGAUGGUAAUUGUUAGCCCAA--AAG ....(((...(((((((..((((((((..----...((((...)))).((.(((....))))).......)))))))).(((((.........))).)))))))))...)))...--... ( -31.70) >DroSec_CAF1 147677 114 - 1 AAAAGGUGUGUAAUUACACGGCCAGGACA----CAAUGGCAAAGCCAAUCGCCAAAGCUGGGAACAUACUUUCUGGCCACACUGUGACACAUUCAGAUGGUAAUUGUUAGCCCAA--AAG ....(((...(((((((..((((((((..----...((((...)))).((.(((....))))).......)))))))).(((((.........))).)))))))))...)))...--... ( -31.70) >DroSim_CAF1 150839 114 - 1 AAAAGGUGUGUAAUUACACGGCCAGGACA----CAAUGGCAAAGCCAAUCGCCAAAGCUGAGAACAUACUUUCUGGCCACACUGUGACACAUUCAGAUGGUAAUUGUUAGCCCAA--AAG ....(((...(((((((..((((((((..----...((((...)))).((((....)).)).........)))))))).(((((.........))).)))))))))...)))...--... ( -29.30) >DroEre_CAF1 147967 115 - 1 AAAAGGUGUGUAAUUACAUGGCCAGGACA----CAAUGGCAAAGCCAAUCGCCAAAGCUGGGAACAUACUUUUUGGCCACACUGUGACACAUUCAGAUGGUAAUUGUUCGCCCAAA-AAG ....((((..(((((((.(((((((((..----...((((...)))).((.(((....))))).......)))))))))(((((.........))).)))))))))..))))....-... ( -32.80) >DroYak_CAF1 155028 120 - 1 AAAAGGUGUGUAAUUACACGGCCAGGACACACACAAUGGCAAAGCCAAUCGCCAAAGCUGGGAACAUACUUUUUGGCCACACUGUGACACAUUCAGAUGGUAAUUGUUCGCCCAAAAAAG ....((((..(((((((..((((((((.........((((...)))).((.(((....))))).......)))))))).(((((.........))).)))))))))..))))........ ( -32.40) >DroAna_CAF1 146039 114 - 1 CGAAGGCGUGUAAUUACACGGCCAGGACA----CAAUGGCAAAGCCAAUCGCCGAAGCUGGGAACAUACUUUCUGGCCACACUGUGACACAUUCAAAUGGUAAUUGUUCCACAGA--AUG .......((((....))))((((((((..----...((((...)))).((.(((....))))).......))))))))...(((((..(((.((....))....)))..))))).--... ( -30.80) >consensus AAAAGGUGUGUAAUUACACGGCCAGGACA____CAAUGGCAAAGCCAAUCGCCAAAGCUGGGAACAUACUUUCUGGCCACACUGUGACACAUUCAGAUGGUAAUUGUUAGCCCAA__AAG ....(((...(((((((..((((((((.........((((...)))).((.(((....))))).......)))))))).(((((.........))).)))))))))...)))........ (-27.18 = -27.48 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:43:00 2006