Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 14,144,319 – 14,144,415 |
Length | 96 |
Max. P | 0.829953 |
Location | 14,144,319 – 14,144,415 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 96.09 |
Mean single sequence MFE | -19.74 |
Consensus MFE | -17.52 |
Energy contribution | -17.44 |
Covariance contribution | -0.08 |
Combinations/Pair | 1.08 |
Mean z-score | -1.42 |
Structure conservation index | 0.89 |
SVM decision value | 0.71 |
SVM RNA-class probability | 0.829953 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 14144319 96 + 23771897 GUUCGCAACGUUUCCGUUGUGUCUGCUUUCCCC-AAA-AAAGGAAGAAAGGACAACGUAGAACGGCAACAACAACGAAUCUCAAAUAAUAAUGAAAGC ((((((((((....))))))((((..(((((..-...-...)))))...))))......))))(....)............................. ( -20.20) >DroSec_CAF1 142122 96 + 1 GUUCGCAACGUUUCCUUUGUGUCUGCUUUCCCC-AAA-AAAGGAAGAAAGGACAGCGAAGAACGGCAACAACAACGAAUCUCAAAUAAUAAUGAAAGC (((((....(((..((((((((((..(((((..-...-...)))))...))))).))))))))(....).....)))))................... ( -19.00) >DroSim_CAF1 145389 96 + 1 GUUCGCAACGUUUCCUUUGUGUCUGCUUUCCCC-AAA-AAAGGAAGAAAGGACAACGAAGAACGGCAACAACAACGAAUCUCAAAUAAUAAUGAAAGC (((((....(((..((((((((((..(((((..-...-...)))))...)))).)))))))))(....).....)))))................... ( -19.00) >DroEre_CAF1 141603 97 + 1 GCUCGCAACGUUUCCUUUGUGUCUGCUUUCCCCCAAA-AAAGGAAGAAAGGACAACGAAGAACGGCAGCAACAACGAAUCUCAAAUAAUAAUGAAAGC (((.((..((((..(((((((((..(((((..((...-...))..)))))))).)))))))))))))))............................. ( -21.00) >DroYak_CAF1 149094 98 + 1 GUUCGCUACGUUUCCUUUGUGUCUGCUUUCCCCCAAAAAAAGGAAGAAAGGACAACGAAGAACGGCAACAAAAACGAAUCUCAAAUAAUAAUGAAAGC ....(((.(((((.(((((((((..(((((..((.......))..)))))))).))))))...(....)..)))))....(((........))).))) ( -19.50) >consensus GUUCGCAACGUUUCCUUUGUGUCUGCUUUCCCC_AAA_AAAGGAAGAAAGGACAACGAAGAACGGCAACAACAACGAAUCUCAAAUAAUAAUGAAAGC (((.((..((((..((((((((((..(((((..........)))))...)))).)))))))))))))))............................. (-17.52 = -17.44 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:42:59 2006