| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 14,143,023 – 14,143,120 |
| Length | 97 |
| Max. P | 0.688386 |
| Location | 14,143,023 – 14,143,120 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 84.05 |
| Mean single sequence MFE | -27.12 |
| Consensus MFE | -15.16 |
| Energy contribution | -16.78 |
| Covariance contribution | 1.61 |
| Combinations/Pair | 1.04 |
| Mean z-score | -3.45 |
| Structure conservation index | 0.56 |
| SVM decision value | 0.32 |
| SVM RNA-class probability | 0.688386 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 14143023 97 - 23771897 -CUGGCUUUUGGCUCUAUUGAGCUCC-UCUAUUGAACACACCCCUCAAUGGGCGAACAACUAUAACCGAUAUAAAGGAGCCAAUGGAACAAAGCCAGU---------G -((((((((.(..(((((((.(((((-((((((((.........))))))).........((((.....)))).))))))))))))).))))))))).---------. ( -33.90) >DroPse_CAF1 157950 94 - 1 GUUGGCUUUUGGCUCUAUUCA-CUCG-UCUAUUGAACACACCCCUCAAUGGGCGAACAACUAUAACCGAUAUAAAAGAGCCAAUGGAACAAAGCCA------------ ..((((((((((((((.....-.(((-((((((((.........))))))))))).....((((.....))))..))))))).......)))))))------------ ( -29.81) >DroSec_CAF1 140913 97 - 1 -CUGGCUUUUGGCUCUAUUGAGCUCC-UCUAUUGAACACACCCCUCAAUGGGCGAACAACUAUAACCGAUAUAAAGGAGCCAAUGGAACAAAGCCAAU---------G -.(((((((.(..(((((((.(((((-((((((((.........))))))).........((((.....)))).))))))))))))).))))))))..---------. ( -31.60) >DroWil_CAF1 174908 78 - 1 ------------CUCUUUUC----UC-UCUAUUGAACACACCCCUCAAUGGG-AAACAACUAUAACCGAUAUAAAGGAGCCAAUGGAACAAAGCCA------------ ------------........----..-(((((((.......(((.....)))-............((........))...))))))).........------------ ( -12.70) >DroAna_CAF1 140079 103 - 1 -----CUUUUGGCUCUAUUGAGAGCCGUCUAUUGAACACACCCCUCAAUGGGCGAACAACUAUAACCGAUAUAAAGGAGCCAAUGGAACAAAGCCAACAACCGGGACC -----...((((((((((((.(..(((((((((((.........))))))))).......((((.....))))..))..)))))))).....)))))........... ( -24.90) >DroPer_CAF1 159270 94 - 1 GUUGGCUUUUGGCUCUAUUCA-CUCG-UCUAUUGAACACACCCCUCAAUGGGCGAACAACUAUAACCGAUAUAAAAGAGCCAAUGGAACAAAGCCA------------ ..((((((((((((((.....-.(((-((((((((.........))))))))))).....((((.....))))..))))))).......)))))))------------ ( -29.81) >consensus __UGGCUUUUGGCUCUAUUCA_CUCC_UCUAUUGAACACACCCCUCAAUGGGCGAACAACUAUAACCGAUAUAAAGGAGCCAAUGGAACAAAGCCA____________ ...(((((((((((((...........((((((((.........))))))))........((((.....))))..))))))).......))))))............. (-15.16 = -16.78 + 1.61)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:42:58 2006