Locus 5145

Sequence ID 3L_DroMel_CAF1
Location 14,138,539 – 14,138,648
Length 109
Max. P 0.973418
window8140

overview

Window 0

Location 14,138,539 – 14,138,648
Length 109
Sequences 6
Columns 112
Reading direction forward
Mean pairwise identity 78.94
Mean single sequence MFE -32.48
Consensus MFE -20.20
Energy contribution -21.94
Covariance contribution 1.74
Combinations/Pair 1.21
Mean z-score -2.77
Structure conservation index 0.62
SVM decision value 1.71
SVM RNA-class probability 0.973418
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 14138539 109 + 23771897
CCGUUAUUAGCUAAUCCGUCUGGUCCUUUGUCGCUAAUCCGGCGGAUUAGCGCGUGCAUCUUUCGCCUAAAAAAGUGCACAAAAACAGACG-GA-UUUUUGGGAAA-ACUUG
..(((.((....((((((((((.......(.(((((((((...))))))))))(((((.((((........))))))))).....))))))-))-)).....)).)-))... ( -39.00)
>DroPse_CAF1 152981 100 + 1
CCGUUAU--GCUAAUCCGUCUGGGCC--------UAAUCCGGCGGAUUAGCGAGUGCGUCUUUUGCCUAAAAAAGUGCACAAAAACGAAGA-GAGUUUUUGGGAAA-ACUUG
.((((.(--(((((((((.(((((..--------...))))))))))))))).(((((.(((((......))))))))))...))))....-(((((((....)))-)))). ( -38.30)
>DroEre_CAF1 135821 108 + 1
GCGUUAUUAGCUAAUCCGUCUGGUCCUUUGUCGCUAAUCCCGCGGAUUAGCGCGUGCAUCUUUCGCCUAAAAAAGUGCACAA-AACAUACG-GA-UUUUUGGGAAA-ACUUG
..(((.((....(((((((.((.......(.(((((((((...))))))))))(((((.((((........)))))))))..-..)).)))-))-)).....)).)-))... ( -32.80)
>DroWil_CAF1 169386 90 + 1
CCGUUAU--GCUAAUCCGUC--GUC------CGCUAAUCCGCCGGAUUAGUG--------UUUCUCUUAAAAAAAUGCA-ACAAACAAAAA-CA-GUUUUGGAAAA-ACGUC
.((((((--(((((((((.(--(..------........)).))))))))))--------)..................-.....(((((.-..-.)))))....)-))).. ( -17.00)
>DroAna_CAF1 135817 109 + 1
CCUUUAU--GCUAAUCCGUCUGGUCUGUUGUCGCUAAUCCGGCGGAUUAGCGCGACCAUCUUACGGUUAAAAAAGUGCACAAAAACAGAAGGGA-UUUUUGGGAAAAACUAU
(((((..--(((((((((((.(((..((....))..))).)))))))))))..((((.......))))...................)))))..-....(((......))). ( -29.50)
>DroPer_CAF1 154293 100 + 1
CCGUUAU--GCUAAUCCGUCUGGGCC--------UAAUCCGGCGGAUUAGCGAGUGCGUCUUUUGCCUAAAAAAGUGCACAAAAACGAAGA-GAGUUUUUGGGAAA-ACUUG
.((((.(--(((((((((.(((((..--------...))))))))))))))).(((((.(((((......))))))))))...))))....-(((((((....)))-)))). ( -38.30)
>consensus
CCGUUAU__GCUAAUCCGUCUGGUCC_____CGCUAAUCCGGCGGAUUAGCGCGUGCAUCUUUCGCCUAAAAAAGUGCACAAAAACAAAAA_GA_UUUUUGGGAAA_ACUUG
.........(((((((((.((((...............)))))))))))))..(((((.((((........))))))))).....((((((....))))))........... (-20.20 = -21.94 +   1.74)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:42:57 2006