Locus 5143

Sequence ID 3L_DroMel_CAF1
Location 14,133,925 – 14,134,038
Length 113
Max. P 0.938458
window8137

overview

Window 7

Location 14,133,925 – 14,134,038
Length 113
Sequences 6
Columns 119
Reading direction forward
Mean pairwise identity 86.41
Mean single sequence MFE -29.64
Consensus MFE -26.07
Energy contribution -25.27
Covariance contribution -0.80
Combinations/Pair 1.12
Mean z-score -2.22
Structure conservation index 0.88
SVM decision value 1.29
SVM RNA-class probability 0.938458
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 14133925 113 + 23771897
UACACGUUUCUCAACUCUUUUCAACUUUUGUUGAAUGAAGCUGAUUACUCAAAUUUGGUUUUGUUUACGAUUCGUCAAGGUGUUGAUGAGUUGAGCAGUC------CCCCUUGCGUCCG
...((((...(((.((...((((((....))))))...)).)))............((..(((((..(((((((((((....))))))))))))))))..------))....))))... ( -26.80)
>DroPse_CAF1 148448 119 + 1
UCCACGUUUCUCAGCUCUUUUCAACUUUUGUUGAAUGAGGCUGAUUACUCAAAUUUGGUUUUGUCUACGAUUCGUCAGGGUGUUGAUGAGUUGAGUAGACACAGGCCCCUUCACCUCCA
.....((...(((((.(((((((((....)))))).))))))))..))........((((((((((((((((((((((....))))))))))..))))))).)))))............ ( -37.40)
>DroSec_CAF1 131748 104 + 1
UACACGUUUCUCAACUCUUUUCAACUUUUGUUGAAUGAAGCUGAUUACUCAAAUUUGGUUUUGUUUACGAUUCGUCAAGGUGUUGAUGAGCUGAGCAGUC------CGCU---------
..((.((((.(((((.((((.......((((.(((..((((..(..........)..))))..)))))))......)))).))))).))))))(((....------.)))--------- ( -22.42)
>DroYak_CAF1 137937 104 + 1
UACACGUUUCUCAACUCUUUUCAACUUUUGUUGAAUGAAGCUGAUUACUCAAAUUUGGUUUUGUUUACGAUUCGUCAAGGUGUUGAUGAGUUGAGCAGUC------CGCU---------
.........((((((((...((((((((((.((((((((((..(..........)..))))).......))))).))))).))))).)))))))).....------....--------- ( -25.21)
>DroAna_CAF1 131797 101 + 1
UACACGUUUCUCGACUCUUUUCAACUUUUGUUGAAUGAAGCUGAUUACUCAAAUUUGGUUUUGUUUACGAUUCGUCAAGGUGUUGAUGAGUUGAGCAGAC------U------------
.....((((((((((((...((((((((((.((((((((((..(..........)..))))).......))))).))))).))))).)))))))).))))------.------------ ( -28.61)
>DroPer_CAF1 149746 119 + 1
UCCACGUUUCUCAGCUCUUUUCAACUUUUGUUGAAUGAGGCUGAUUACUCAAAUUUGGUUUUGUCUACGAUUCGUCAGGGUGUUGAUGAGUUGAGUAGACACAGGCCCCUUCACCUCCA
.....((...(((((.(((((((((....)))))).))))))))..))........((((((((((((((((((((((....))))))))))..))))))).)))))............ ( -37.40)
>consensus
UACACGUUUCUCAACUCUUUUCAACUUUUGUUGAAUGAAGCUGAUUACUCAAAUUUGGUUUUGUUUACGAUUCGUCAAGGUGUUGAUGAGUUGAGCAGAC______CCCU_________
.........((((((((...((((((((((.(((((.((((.(((((........)))))..))))...))))).))))).))))).))))))))........................ (-26.07 = -25.27 +  -0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:42:54 2006