Locus 5142

Sequence ID 3L_DroMel_CAF1
Location 14,132,992 – 14,133,087
Length 95
Max. P 0.508833
window8136

overview

Window 6

Location 14,132,992 – 14,133,087
Length 95
Sequences 6
Columns 96
Reading direction reverse
Mean pairwise identity 91.26
Mean single sequence MFE -21.63
Consensus MFE -16.94
Energy contribution -18.38
Covariance contribution 1.44
Combinations/Pair 1.12
Mean z-score -2.42
Structure conservation index 0.78
SVM decision value -0.05
SVM RNA-class probability 0.508833
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 14132992 95 - 23771897
ACAAAAUCUGUGAAAUAA-GGCAAACCGUAAUUAGUUGUUAUCUGGCAGAACUUAUCUUUGUCCGGACAAUCCCAGCAAUUAAUUGCAUUUUGUCA
..................-((((((..(((((((((((((.(((((((((.......)))).))))).......)))))))))))))..)))))). ( -24.20)
>DroSec_CAF1 130788 95 - 1
ACAAAAUCUGUGAAAUAA-GGCAACCCGUAAUUAGUUGUUAUCUGGCAGAACUUAUCUUUGUCCGGACAAUCCCAGCAAUUAAUUGCAUUUUGUCA
..................-(((((...(((((((((((((.(((((((((.......)))).))))).......)))))))))))))...))))). ( -22.70)
>DroSim_CAF1 134047 95 - 1
ACAAAAUCUGUGAAACAA-GGCAACCCGUAAUUAGUUGUUAUCUGGCAGAACUUAUCUUUGUCCGGACAAUCCCAGCAAUUAAUUGCAUUUUGUCA
..................-(((((...(((((((((((((.(((((((((.......)))).))))).......)))))))))))))...))))). ( -22.70)
>DroEre_CAF1 129996 95 - 1
ACAAAAUCUGUGAAAUAA-GGCAACGCGUAAUUAGUUGUAAUCUGGCAGAACUCAUCUGUGUCCGGACAAUCCCAGCAAUUAAUUGCAUUUUGUCA
(((((((...........-(....)..((((((((((((......(((((.....)))))....((......)).))))))))))))))))))).. ( -23.10)
>DroYak_CAF1 136770 95 - 1
ACAAAAUCUGUAAAAUAA-GGCAACCCGCAAUUAGUUGUAAUCUGGCAGAACUCAUCUAUGUCCGGACAAUCCCAGCAAUUAAUUGCAUUUUGUCA
..................-(((((...((((((((((((.....((((...........)))).((......)).))))))))))))...))))). ( -22.10)
>DroAna_CAF1 130809 92 - 1
ACAAAAUCUGUAUAAAAACAGCA--UCGUAAUUAGUUUUAAUCUCGCAGAACUCAUCAC--UCUGGACAAUCCCUGCAAUUAAUUGCAUUUUGUCA
(((((((((((......))))..--..((((((((((........((((......((..--....))......))))))))))))))))))))).. ( -15.00)
>consensus
ACAAAAUCUGUGAAAUAA_GGCAACCCGUAAUUAGUUGUAAUCUGGCAGAACUCAUCUUUGUCCGGACAAUCCCAGCAAUUAAUUGCAUUUUGUCA
...................(((((...(((((((((((((....((((((.......)))))).((......)))))))))))))))...))))). (-16.94 = -18.38 +   1.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:42:53 2006