Locus 514

Sequence ID 3L_DroMel_CAF1
Location 1,520,729 – 1,520,833
Length 104
Max. P 0.905400
window771

overview

Window 1

Location 1,520,729 – 1,520,833
Length 104
Sequences 5
Columns 104
Reading direction reverse
Mean pairwise identity 92.50
Mean single sequence MFE -30.22
Consensus MFE -23.76
Energy contribution -24.96
Covariance contribution 1.20
Combinations/Pair 1.07
Mean z-score -2.03
Structure conservation index 0.79
SVM decision value 1.04
SVM RNA-class probability 0.905400
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 1520729 104 - 23771897
ACAGCAAUCACUAGCCCCAAAACUGGGUUAACACUGGCUGCGUGUUUGUUUGGACCUACCAACAACAAAGACCAGCUGGGCAAACAAAUAUCGCGGAGUAGAGC
...((......((((((.......))))))...(..((((.((.(((((((((.....)))..)))))).))))))..).............)).......... ( -28.80)
>DroSec_CAF1 25602 104 - 1
GCAGCAAUCACUAGCCCCAAAACUGGGUUAACACUGGCUGCGUGUUUGUUUGGACCUACCAACAACAAAGACCAGCUGGGCAAACAAAUAUCGCGGAGUGGAGC
.......(((((.((((((....))))......(..((((.((.(((((((((.....)))..)))))).))))))..).............))..)))))... ( -31.50)
>DroSim_CAF1 26121 104 - 1
GCAGCAAUCACUAGCCCAAAAACUGGGUUAACACUGGCUGCGUGUUUGUUUGGACCUACCAACAACAAAGACCAGCUGGGCAAACAAAUAUCGCGGAGUGGAGC
((.((......(((((((.....)))))))...(..((((.((.(((((((((.....)))..)))))).))))))..))).........((((...)))).)) ( -31.60)
>DroEre_CAF1 27560 104 - 1
ACUUCAAUCACUAGCCCAAAAACUGGGUUAACACUGGCUGCGUCUCGGUUUGGACCUACCAACAACAAAGACCAGCUGGGCAAACAAAUACCACGGAGUGGAGU
((((((.((..(((((((.....)))))))...(..((((.((((..((((((.....)))..)))..))))))))..)................)).)))))) ( -34.30)
>DroYak_CAF1 25389 104 - 1
ACUUCAAUUACUAGCUCAAAAACUGGGUUAACACUGGCUGCGUCUUGGCUUAGACCUACCAACAACAAAGACCAGCUGGGCAAACAAAUAUCGCGGAGUAGACC
(((((......(((((((.....)))))))...(..((((.(((((.....................)))))))))..)...............)))))..... ( -24.90)
>consensus
ACAGCAAUCACUAGCCCAAAAACUGGGUUAACACUGGCUGCGUGUUUGUUUGGACCUACCAACAACAAAGACCAGCUGGGCAAACAAAUAUCGCGGAGUGGAGC
.......(((((((((((.....))))))....(..((((.((.(((((((((.....))))..))))).))))))..).................)))))... (-23.76 = -24.96 +   1.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:58 2006