| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 14,127,611 – 14,127,710 |
| Length | 99 |
| Max. P | 0.678663 |
| Location | 14,127,611 – 14,127,710 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 77.46 |
| Mean single sequence MFE | -16.75 |
| Consensus MFE | -12.02 |
| Energy contribution | -12.85 |
| Covariance contribution | 0.83 |
| Combinations/Pair | 1.16 |
| Mean z-score | -1.11 |
| Structure conservation index | 0.72 |
| SVM decision value | 0.30 |
| SVM RNA-class probability | 0.678663 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 14127611 99 - 23771897 ---CCAGCAUCAAA-----AAUCACUCGCCCAUUAGAGCAUGUUUAAUGUUAUUUAUUCAUUAGGCUCAAGUGUGCGCGAAAAAUAACAAUUAUCAAAAAAGC--AAAA ---...........-----......(((((((((.(((((((..(((......)))..)))...)))).)))).).)))).......................--.... ( -15.90) >DroGri_CAF1 121472 94 - 1 --------ACCAAA-----AAUCGCGCGCCCAUUAGAGCGUGUUUAAUGUUAUUUAUUCAUUAGGUUUAAGUGUGCGCGAAAAAUAACAAUUACAAAUAGAAGA--AAA --------......-----..((((((((...(((((.((((..(((......)))..)))..).)))))..))))))))........................--... ( -19.80) >DroWil_CAF1 156955 92 - 1 --------ACCAAA-----AAUCGCGAGCCCAUUAGAGCGUGUUUAAUGUUAUUUAUUCAUUAGGUUUAAGUGUGCGCGAAAAAUAACAAUUAUAAAAAAAA----AAA --------......-----..(((((.((...(((((.((((..(((......)))..)))..).)))))..)).)))))......................----... ( -13.90) >DroMoj_CAF1 138985 93 - 1 --------GCCGUG-----AAUCGCGC--CCAUUAGAGCGCGUUUAAUGUUAUUUAUUCAUUAGGUUAAAGUGUGCGCGAAAAAUAACAAUUACAAAACGAAAAC-CGA --------......-----..((((((--.((((..(((....((((((.........)))))))))..)))).)))))).........................-... ( -16.60) >DroAna_CAF1 126351 100 - 1 AAUGGAAAAUAAAAAACGAAAUCGCUCGCCCAUUAGAGCAUGUUUAAUGUUAUUUAUUCAUUAGGCUCAAGUGUGCGCGAAAAAUAACAAUUAUAAAAA---------A .....................((((..((.((((.(((((((..(((......)))..)))...)))).)))).))))))...................---------. ( -17.20) >DroPer_CAF1 143778 86 - 1 ----CGGCGUC---------ACCGCGCGCCCAUUAGAGCAUGUUUAAUGUUAUUUAUUCAUUAGACUCAAGAGUGCGCGAAAAAUAACAAUUAUCAA----------AA ----.......---------..(((((((...((.((....((((((((.........))))))))))))..)))))))..................----------.. ( -17.10) >consensus ________ACCAAA_____AAUCGCGCGCCCAUUAGAGCAUGUUUAAUGUUAUUUAUUCAUUAGGCUCAAGUGUGCGCGAAAAAUAACAAUUAUAAAAA_AA____AAA ........................(((((.((((.(((((((..(((......)))..)))...)))).)))).))))).............................. (-12.02 = -12.85 + 0.83)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:42:49 2006