Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 14,122,400 – 14,122,516 |
Length | 116 |
Max. P | 0.508890 |
Location | 14,122,400 – 14,122,516 |
---|---|
Length | 116 |
Sequences | 6 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 96.21 |
Mean single sequence MFE | -24.62 |
Consensus MFE | -22.73 |
Energy contribution | -23.23 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.03 |
Mean z-score | -0.91 |
Structure conservation index | 0.92 |
SVM decision value | -0.05 |
SVM RNA-class probability | 0.508890 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 14122400 116 + 23771897 ---UAUGUGCAACAAUUUGACCGCAGUUGCGGCACAUUUGAACCCAAAUUACUUGAGAUAAAUGCGUACUUAAUUUGCAAGACUUUUGAGUGGUGGUAUCAAAAUAAUAAUCAAUGUUC ---..(((((..(((((.......)))))..)))))(((((..(((...((((..(((....((((.........))))....)))..)))).)))..)))))................ ( -25.90) >DroPse_CAF1 136862 116 + 1 ---UAUGUGCAACAAUUUGACCGCAGUUGCGGCAUAUUUGAACCCAAAUUACUUCAGAUAAAUGCGUACUUAAUUUGCAAGACUUUUGAGUGGUGGUAUCAAAAUAAUAAUCAAUGUUC ---.......((((..((((((((....))))....(((((..(((...((((.((((....((((.........)))).....)))))))).)))..))))).......)))))))). ( -22.30) >DroEre_CAF1 119750 119 + 1 GAGUAUGUGCAACAAUUUGACCGCAGUUGCGGCACAUUUGAACCCAAAUUACUUGAGAUAAAUGCGUACUUAAUUUGCUAGACUUUUGAGUGGUGGUAUCAAAAUAAUAAUCAAUGUUU ((...(((((..(((((.......)))))..)))))(((((..(((...((((..(((.....(((.........))).....)))..)))).)))..))))).......))....... ( -25.10) >DroYak_CAF1 125226 119 + 1 UCGUAUAUGCAACAAUUUGACCGCAGUUGCGGCACAUUUGAACCCAAAUUACUUGAGAUAAAUGCGUACUUAAUUUGCAAGACUUUUGAGUGGUGGUAUCAAAAUAAUAAUCAAUGUAC ..((((((.........((.((((....))))))..(((((..(((...((((..(((....((((.........))))....)))..)))).)))..)))))..........)))))) ( -26.20) >DroAna_CAF1 120797 116 + 1 ---UAUGUGCAACAAUUUGACCGCAGUUGCGGCACAUUUGAACCCAAAUUACUUGAGAUAAAUGCGUACUUAAUUUGCAAGACUUUUGAGUGGUGGUAUCAAAAUAAUAAUCAAAGUUC ---..(((((..(((((.......)))))..)))))(((((..(((...((((..(((....((((.........))))....)))..)))).)))..)))))................ ( -25.90) >DroPer_CAF1 138128 116 + 1 ---UAUGUGCAACAAUUUGACCGCAGUUGCGGCAUAUUUGAACCCAAAUUACUUCAGAUAAAUGCGUACUUAAUUUGCAAGACUUUUGAGUGGUGGUAUCAAAAUAAUAAUCAAUGUUC ---.......((((..((((((((....))))....(((((..(((...((((.((((....((((.........)))).....)))))))).)))..))))).......)))))))). ( -22.30) >consensus ___UAUGUGCAACAAUUUGACCGCAGUUGCGGCACAUUUGAACCCAAAUUACUUGAGAUAAAUGCGUACUUAAUUUGCAAGACUUUUGAGUGGUGGUAUCAAAAUAAUAAUCAAUGUUC .....(((((..(((((.......)))))..)))))(((((..(((...(((((((((....((((.........))))....))))))))).)))..)))))................ (-22.73 = -23.23 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:42:48 2006